1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtaatgttcaatatttcattcaaattaattttatatttcttgaatttttttgcttagatgtttctgtccgtttgaacctgtgcttgtttcagGCCCATATTGAGCAGTGGATGGACTTTGCTGCGACAGAGGTTGATGCCAGCATTGGAAAGTGGTTGTACCCACGTATGGGGTTTTATCCCTATGCTGCTG
species | Zea mays |
transcript | GRMZM2G029559_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCTTCACTGATTGATTAT GCCCATATTGAGCAGTGGATGGACTTTGCTGCGACAGAGGTTGATGCCAGCEST: gi|211221751|gb|FL290080.1|FL290080
genomic: GATCTTCACTGATTGATTATgtgagtaatg ... cttgtttcagGCCCATATTGAGCAGTGGATGGACTTTGCTGCGACAGAGGTTGATGCCAGC
EST: CTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTAT GCCCATATTGAGCAGTGGATGGACTTTGCTGCGACAGAGGTTGATGCCAGCEST: gi|7216701|gb|AW562823.1|AW562823
genomic: CTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTATgtgagtaatg ... cttgtttcagGCCCATATTGAGCAGTGGATGGACTTTGCTGCGACAGAGGTTGATGCCAGC
EST: CTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTAT GCCCATATTGAGCAGTGGATGGACTTTGCTGCGACAGAGGTTGATGCCAGCEST: gi|32807718|gb|CD959952.1|CD959952
genomic: CTCGCTTGAAGGCTAACAACCCACTTTACGGATCTTCACTGATTGATTATgtgagtaatg ... cttgtttcagGCCCATATTGAGCAGTGGATGGACTTTGCTGCGACAGAGGTTGATGCCAGC
EST: GATCTTCCACTGATTGATTAT GCCCATATTGAGCAGTGGATGGACTTTGCTGCGACAGAGGTTGATGCCAGC
genomic: GATCTT-CACTGATTGATTATgtgagtaatg ... cttgtttcagGCCCATATTGAGCAGTGGATGGACTTTGCTGCGACAGAGGTTGATGCCAGC
tcttgaatttttttgcttagatgtttctgtccgtttgaacctgtgcttgtttcagGCCCATATTGAGCAGTGGATGGACTTTGCTGCGACAGAGGTTGATGCCAGCATTGGAAAGTGGTTGTACCCACGTATGGGGTTTTATCCCTATGCTGCTG
cttgtttc CT-rich tract
aatttttttgctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaatgttcaatatttcattcaaattaattttatatttcttgaatttttttgcttagatgtttctgtccgtttgaacctgtgcttgtttcagGCCCATATTGAGCAGTGGATGGACTTTGCTGCGACAGAGGTTGATGCCAGCATTGGAAAGTGGTTGTACCCACGTATGGGGTTTTATCCCTATGCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT