Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtgccgtgccgcccggatgcgttccgtgagacgcaccaacacgcgttgtccatcgctctgaccgactccctttttttcttattcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGACGGTGGCCGAGGCGCACGTACTCGCGTACGAGGCGATGGGCGACAACAC

Basic information

species Zea mays
transcript GRMZM2G029547_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029547_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g45200.1 (Oryza sativa), 3'ss of exon 4
-----gtccgtgccgtgccgcccggatgcgttccgtga---gacgcaccaacacgcgttgtccatcgctctgaccgactccctttt---tttcttattcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGACGGTGGCCGAGGCGCACGTACTCGCGTACGAGGCGATGGGCGACAACAC
      | |  ||   |   |  | |||    |   ||   ||   |  |||| |   || |  |     ||  |    | |  |    | ||||    | |  |||||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| |  | ||||||||||||||||||||||||
gtacactacaggcttcgatacgagcatgtaaactacgatcggagaaaggaacatggtgtgcctttgtgcttgtgcagtacacactgacatgtcttgcgtgtcgacagGGGCTCGCGCCATGCTCGCCGACGGCCTGCTCGCGACGGCGAGCGTGGAGACGGTGGCGGAGGCGCACGTCCGGGTGTACGAGGCGATGGGCGACAACAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71765367|gb|DR963304.1|DR963304
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|148940153|gb|EC884907.2|EC884907
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|93017492|gb|EB643012.1|EB643012
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|89247580|gb|DY619366.1|DY619366
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|76016925|gb|DT944095.1|DT944095
EST:     CCGCCGCAACTCCACCGCGTCCATCGCGTATTTCAAAG                         GGGCTCGTGCAATGTTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|78074665|gb|DV503099.1|DV503099
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|71760781|gb|DR958718.1|DR958718
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|78092716|gb|DV521090.1|DV521090
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|40302913|gb|CK347300.1|CK347300
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCGCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|74241161|gb|DT649075.1|DT649075
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|89755533|gb|DY685920.1|DY685920
EST:     CCCGGGGTTCGGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGGTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|149088547|gb|EE177658.2|EE177658
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|86470587|gb|DY236957.1|DY236957
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|148943645|gb|EC888709.2|EC888709
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|101391673|gb|EB817773.1|EB817773
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|86468372|gb|DY234742.1|DY234742
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|148934725|gb|EC878774.2|EC878774
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|211505807|gb|FL128556.1|FL128556
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|76287791|gb|DV027359.1|DV027359
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|101395626|gb|EB819742.1|EB819742
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|89247581|gb|DY619367.1|DY619367
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|110963294|gb|EE183194.1|EE183194
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|94478024|gb|EB706982.1|EB706982
EST:     CCGGGGGTTCCGCCCCCGCAACTCCACCGCGTCCATCGCGTATATCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|74246139|gb|DT654053.1|DT654053
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|101387264|gb|EB815649.1|EB815649
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGGCA-TGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAG
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTG-CAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAG
EST: gi|148940154|gb|EC884908.2|EC884908
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|93017493|gb|EB643013.1|EB643013
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|76908718|gb|DV163064.1|DV163064
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|37386267|gb|CF630320.1|CF630320
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCGCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|76924386|gb|DV169928.1|DV169928
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|149100226|gb|EE186288.2|EE186288
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|32164815|gb|CD670454.1|CD670454
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|78091021|gb|DV519395.1|DV519395
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|149081901|gb|EE171062.2|EE171062
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|149079843|gb|EE168844.2|EE168844
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|76010875|gb|DT938045.1|DT938045
EST:     NNNGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|211393978|gb|FL446397.1|FL446397
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|93012591|gb|EB638111.1|EB638111
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|110515830|gb|EE020417.1|EE020417
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|78079186|gb|DV507598.1|DV507598
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|88747586|gb|DY531727.1|DY531727
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|78119642|gb|DV538026.1|DV538026
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
EST: gi|148982627|gb|EE028425.2|EE028425
EST:     CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAG                         GGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA
genomic: CCCGGGGTTCCGCCGCCGCAACTCCACCGCGTCCATCGCGTATCTCAAAGgtccgtgccg ... tcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacacgcgttgtccatcgctctgaccgactccctttttttcttattcggccgcagGGGCTCGTGCAATGCTCGCCGACGGCCTGCTCGCCACGGCGAACGTGGAGACGGTGGCCGAGGCGCACGTACTCGCGTACGAGGCGATGGGCGACAACAC
                  ctctgac  putative branch site (score: 3)
                        ccgactcccttttttt  CT-rich tract
                                 tttttttcttatt  TA-rich tract