1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aattattttattttgtttttatgttatatacttcgtttatcaatatgctcttgaaacaatttcttccataggatactaaattgctatttcctctttctagATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTG
species | Zea mays |
transcript | GRMZM2G029396_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTCAGCCTTGAAGAACCATGCCATCTTCCGTTTTTGCGCAATTCCCCAG ATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTTEST: gi|61118554|gb|DN559515.1|DN559515
genomic: TGTCAGCCTTGAAGAACCATGCCATCTTCCATTTTTGCGCAATTCCCCAGgtaaataacc ... ctctttctagATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTT
EST: TGTCAGCCTTGAAGAACCATGCCATCTTCCGTTTTTGCGCAATTCCCCAG ATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTTEST: gi|60338190|gb|DN205163.1|DN205163
genomic: TGTCAGCCTTGAAGAACCATGCCATCTTCCATTTTTGCGCAATTCCCCAGgtaaataacc ... ctctttctagATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTT
EST: TGTCAGCCTTGAAGAACCATGCCATCTTCCGTTTTTGCGCAATTCCCCAG ATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTTEST: gi|211142093|gb|FL424854.1|FL424854
genomic: TGTCAGCCTTGAAGAACCATGCCATCTTCCATTTTTGCGCAATTCCCCAGgtaaataacc ... ctctttctagATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTT
EST: TGTCAGCCTTGAAGAACCATGCCATCTTCCGTTTTTGCGCAATTCCCCAG ATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTTEST: gi|61118553|gb|DN559514.1|DN559514
genomic: TGTCAGCCTTGAAGAACCATGCCATCTTCCATTTTTGCGCAATTCCCCAGgtaaataacc ... ctctttctagATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTT
EST: TGTCAGCCTTGAAGAACCATGCCATCTTCCGTTTTTGCGCAATTCCCCAG ATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTTEST: gi|60399247|gb|DN232061.1|DN232061
genomic: TGTCAGCCTTGAAGAACCATGCCATCTTCCATTTTTGCGCAATTCCCCAGgtaaataacc ... ctctttctagATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTT
EST: TGTCAGCCTTGAAGAACCATGCCATCTTCCGTTTTTGCGCAATTCCCCAG ATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTT
genomic: TGTCAGCCTTGAAGAACCATGCCATCTTCCATTTTTGCGCAATTCCCCAGgtaaataacc ... ctctttctagATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTT
tgctcttgaaacaatttcttccataggatactaaattgctatttcctctttctagATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTG
tactaaa putative branch site (score: 136)
ttgctatttcctcttt CT-rich tract
atactaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattattttattttgtttttatgttatatacttcgtttatcaatatgctcttgaaacaatttcttccataggatactaaattgctatttcctctttctagATAATGGCAATTGGAACATGTGCTCTTTGCTACAATAACGTGCATGTCTTTAGAGGAGTTGTAAAGATGAGACGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - -tgttttt
- - - - - - - - - - - - - - - - - - - - - -tatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatt