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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgtagtagtagtagtacccttgctcacgccatgtctttcctggcgacaaccgcttcacgcctgcaacaacttctggtcagGTTGCCAAGGAGAACGCCGACGTGATCATCATGGATGACAACTTCTCCACCATCATCAACGTCGCCAAATGGGGCCGGTCCGTATACATCAACATCCAGA

Basic information

species Zea mays
transcript GRMZM2G028812_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028812_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g71240.1 (Oryza sativa), 3'ss of exon 4
----gtttgttgtagtagtagt-agtacccttgctcacgccatgtctttcctggcgacaaccg-cttcacgcctgcaacaacttctgg--------tcagGTTGCCAAGGAGAACGCCGACGTGATCATCATGGATGACAACTTCTCCACCATCATCAACGTCGCCAAATGGGGCCGGTCCGTATACATCAACATCCAGA
        |    |||| || | | | |||||  | ||   || |       |      |  | ||| | |  ||       || | |        |||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||||||
ctgaaacagagagagtactacttactgccctttgttacaaaattttaggttggagtttgattgacttgatgaatgttttgggtttttgcttgttcatcagGTTGCCAAGGAGAACGCCGATGTGATCATCATGGACGACAACTTCTCGACCATCATCAACGTTGCCAAATGGGGTCGCTCCGTCTACATCAACATCCAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgccatgtctttcctggcgacaaccgcttcacgcctgcaacaacttctggtcagGTTGCCAAGGAGAACGCCGACGTGATCATCATGGATGACAACTTCTCCACCATCATCAACGTCGCCAAATGGGGCCGGTCCGTATACATCAACATCCAGA
 tgctcac  putative branch site (score: 2)
                                            cttct  putative PPT