1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctcaatgtatgtgagaaggtcttctcttaatacagtgcccaggggctgtattacccccataggccgagtttttttaaggctacttttcttatatctgcagGCTGCAAGAGGTCTAGCTAACTTAGCTGCACATGGGGACAACAATGACAACAATGCTGCTGTAGGTCAGGAAGCTGGGGCTCTGGAGGCACTAGTGCAAC
species | Zea mays |
transcript | GRMZM2G028796_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGTTACACTTGCTCGATCATGTAAACTTGATGGCGCCCTAAAACAG GCTGCAAGAGGTCTAEST: gi|211104626|gb|FL034751.1|FL034751
genomic: CTTTGGTTACACTTGCTCGATCATGTAAACTTGATGGCGCCCTAGAACAGgtaaacgaca ... atatctgcagGCTGCAAGAGGTCTA
EST: CTTTGGTTACACTTGCTCGATCATGTAAACTTGATGGCGCCCTANAACAG GCTGCAAGAGGTCTAGCTAACTTAGCTGEST: gi|211104623|gb|FL034748.1|FL034748
genomic: CTTTGGTTACACTTGCTCGATCATGTAAACTTGATGGCGCCCTAGAACAGgtaaacgaca ... atatctgcagGCTGCAAGAGGTCTAGCTAACTTAGCTG
EST: CTTTGGTTACACTTGCTCGATCATGTAAACTTGATGGCGCCCTAGAACAG GCTGCAAGAGGTCTAGCTAACTTAGC
genomic: CTTTGGTTACACTTGCTCGATCATGTAAACTTGATGGCGCCCTAGAACAGgtaaacgaca ... atatctgcagGCTGCAAGAGGTCTAGCTAACTTAGC
ctgtattacccccataggccgagtttttttaaggctacttttcttatatctgcagGCTGCAAGAGGTCTAGCTAACTTAGCTGCACATGGGGACAACAATGACAACAATGCTGCTGTAGGTCAGGAAGCTGGGGCTCTGGAGGCACTAGTGCAAC
cttttcttatatct CT-rich tract
tacttttcttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaatgtatgtgagaaggtcttctcttaatacagtgcccaggggctgtattacccccataggccgagtttttttaaggctacttttcttatatctgcagGCTGCAAGAGGTCTAGCTAACTTAGCTGCACATGGGGACAACAATGACAACAATGCTGCTGTAGGTCAGGAAGCTGGGGCTCTGGAGGCACTAGTGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - atgtatg
- - - - - - - - - - - - - - - - - - - - -ggggctg