1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgctcctcaaattttaattaacactcaataacgggtggatattttacttagtgcggacgacgatcatcatcctgttgtactttgatgacttgcagGTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGATGGCTTCAACAAAACGGGCATACCGAACACACTATGGGAGTTAGTGGAAC
species | Zea mays |
transcript | GRMZM2G028521_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAG GTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGATEST: gi|32847052|gb|CD986733.1|CD986733
genomic: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAGgtatgctcct ... tgacttgcagGTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGAT
EST: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAG GTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGATEST: gi|116823093|gb|EC866594.1|EC866594
genomic: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAGgtatgctcct ... tgacttgcagGTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGAT
EST: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAG GTGTCATATTCACTGCTGATCTTTTTEST: gi|32845795|gb|CD985476.1|CD985476
genomic: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAGgtatgctcct ... tgacttgcagGTGTCATATTCACTGCTGATCTTTTT
EST: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAG GTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGATEST: gi|32834633|gb|CD974311.1|CD974311
genomic: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAGgtatgctcct ... tgacttgcagGTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGAT
EST: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAG GTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGATEST: gi|67022584|gb|CO451333.1|CO451333
genomic: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAGgtatgctcct ... tgacttgcagGTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGAT
EST: TTGTTCTTCTGGCACTCGATTT-ACGGACGCACA-GCT-GTCTTGAGAAG -TGTCATATT-ACTGCTGATCTTTTTEST: gi|211417822|gb|FL246636.1|FL246636
genomic: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAGgtatgctcct ... tgacttgcagGTGTCATATTCACTGCTGATCTTTTT
EST: TTGTTCTTCTGGCACTCGATTTTACAGACGCACAAGCTTGTCTTGAGAAG GTGTCATATTCACTGCTGATCTTTTTCTGKGGGATGTTTATCACTGTTGATEST: gi|32928620|gb|CF033432.1|CF033432
genomic: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAGgtatgctcct ... tgacttgcagGTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGAT
EST: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAG GTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGAT
genomic: TTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAGgtatgctcct ... tgacttgcagGTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGAT
attttacttagtgcggacgacgatcatcatcctgttgtactttgatgacttgcagGTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGATGGCTTCAACAAAACGGGCATACCGAACACACTATGGGAGTTAGTGGAAC
ctttgat putative branch site (score: 5)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctcctcaaattttaattaacactcaataacgggtggatattttacttagtgcggacgacgatcatcatcctgttgtactttgatgacttgcagGTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTTGATGGCTTCAACAAAACGGGCATACCGAACACACTATGGGAGTTAGTGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA