1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatgactccttagtcctcagttctaaagttattcctctggcacaaactaaacttctgttctaactaatgtgtgcaaccttgggttctaactatgttgtgctcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATCCCAAGTTCAAGAGAAAGGGCGATGACCTCTTCTACGAGCACACACTGA
species | Zea mays |
transcript | GRMZM2G028218_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCA CCTGATACTACCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATEST: gi|33100170|gb|CF060130.1|CF060130
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCA CCTGATACTACCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATEST: gi|51592714|gb|CV071860.1|CV071860
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCG CCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATEST: gi|32845319|gb|CD985000.1|CD985000
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCA CCTGATACTACCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATEST: gi|32836749|gb|CD976427.1|CD976427
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCA CCTGATACTACCACT
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACT
tgttctaactaatgtgtgcaaccttgggttctaactatgttgtgctcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATCCCAAGTTCAAGAGAAAGGGCGATGACCTCTTCTACGAGCACACACTGA
ttctaac putative branch site (score: 1)
taactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgactccttagtcctcagttctaaagttattcctctggcacaaactaaacttctgttctaactaatgtgtgcaaccttgggttctaactatgttgtgctcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATCCCAAGTTCAAGAGAAAGGGCGATGACCTCTTCTACGAGCACACACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA