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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgcaccacggtccacgtacggctggatcatatcaatgccaaacacacagcccatttgctcgaaggtttactgaaacgaacgctagtatttcccgcagGCATCACCAGCACGGGCGGTGGCAGGCGCGCATCGGCCGCGTCTCGGGCAACAAGGACCTCTACCTCGGAACGTTCA

Basic information

species Zea mays
transcript GRMZM2G028151_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028151_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g56050.1 (Oryza sativa), 3'ss of exon 6
gtttgtgcaccacggtccacgtacggctggatcatatcaatgccaaacacacagcccatttgctcgaaggtttact-gaaacgaacgctagtatttcccgcagGCATCACCAGCACGGGCGGTGGCAGGCGCGCATCGGCCGCGTCTCGGGCAACAAGGACCTCTACCTCGGAACGTTCA
  | ||     |         | | ||   |  |   |||    |       |||   ||  ||    | || ||| |    |    ||   | |    |||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||| | || || ||||
-gtcgttgttaatcacatggttgcagcaaaaatacggcaaatggatcttggaagcatgttaactgagtgattaacttggtgtgttttctgtcaatgtttgcagGCATCATCAGCACGGGAGATGGCAGGCGCGAATCGGCCGCGTCTCGGGCAACAAGGACCTTTACTTGGGGACATTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78092257|gb|DV520631.1|DV520631
EST:     AAAAGCAGCGGCTTCTCGCGCGGCGCTTCGATCTACCGGGGAGTCACCAG                         GCATCACCAGCACGGGCGGTGGCAGGCGCGCATCGGCCGCGTCTCGGGCAA
genomic: AAAAGCAGCGGCTTCTCGCGCGGCGCTTCGATCTACCGGGGAGTCACCAGgtttgtgcac ... tttcccgcagGCATCACCAGCACGGGCGGTGGCAGGCGCGCATCGGCCGCGTCTCGGGCAA
EST: gi|76012118|gb|DT939288.1|DT939288
EST:     AAAAGCAGCGGCTTCTCGCGCGGCGCTTCGATCTACCGGGGAGTCACCAG                         GCATCACCAGCACGGGCGGTGGCAGGCGCGCATCGGCCGCGTCTCGGGCAA
genomic: AAAAGCAGCGGCTTCTCGCGCGGCGCTTCGATCTACCGGGGAGTCACCAGgtttgtgcac ... tttcccgcagGCATCACCAGCACGGGCGGTGGCAGGCGCGCATCGGCCGCGTCTCGGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacacagcccatttgctcgaaggtttactgaaacgaacgctagtatttcccgcagGCATCACCAGCACGGGCGGTGGCAGGCGCGCATCGGCCGCGTCTCGGGCAACAAGGACCTCTACCTCGGAACGTTCA
                                           tatttccc  CT-rich tract
                                        tagtattt  TA-rich tract