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gtaagccatcattgcgacttccactccatgccctgggaagaataatggtgtcaccctcatcttctttctcacctctcataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
species | Zea mays |
transcript | GRMZM2G027851_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAGEST: gi|50333105|gb|CO528231.1|CO528231
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAGEST: gi|78080130|gb|DV508542.1|DV508542
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAGEST: gi|74238599|gb|DT646513.1|DT646513
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAGEST: gi|93282181|gb|EB674445.1|EB674445
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAGEST: gi|78093453|gb|DV521827.1|DV521827
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAGEST: gi|78115473|gb|DV533861.1|DV533861
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAGEST: gi|76936699|gb|DV174843.1|DV174843
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
ctgggaagaataatggtgtcaccctcatcttctttctcacctctcataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
ttctcac putative branch site (score: 2)
tcaccctcatcttctt CT-rich tract
aagaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccatcattgcgacttccactccatgccctgggaagaataatggtgtcaccctcatcttctttctcacctctcataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG