1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcctttgtactgttgccagtttataattggtcaacccaggcatggggattttactaacatgattttgtttccgttgcatgtgtttgctatgataacatagGTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT
species | Zea mays |
transcript | GRMZM2G027821_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGT GTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAAEST: gi|166600934|gb|EG079350.1|EG079350
genomic: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGTgtacgtctat ... gataacatagGTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAA
EST: ATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGT GTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAAEST: gi|211064881|gb|FL464879.1|FL464879
genomic: ATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGTgtacgtctat ... gataacatagGTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAA
EST: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAAAACCGGCTTTGT GTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAAEST: gi|60357315|gb|DN224288.1|DN224288
genomic: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGTgtacgtctat ... gataacatagGTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAA
EST: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGT GTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAAEST: gi|211190398|gb|FL318556.1|FL318556
genomic: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGTgtacgtctat ... gataacatagGTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAA
EST: CGACGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGT GTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAAEST: gi|211064880|gb|FL464878.1|FL464878
genomic: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGTgtacgtctat ... gataacatagGTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAA
EST: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAAAACCGGCTTTGT GTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAAEST: gi|74235248|gb|DT643162.1|DT643162
genomic: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGTgtacgtctat ... gataacatagGTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAA
EST: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGT GTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAAEST: gi|32847753|gb|CD987434.1|CD987434
genomic: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGTgtacgtctat ... gataacatagGTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAA
EST: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGT GTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAAEST: gi|78078285|gb|DV506700.1|DV506700
genomic: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGTgtacgtctat ... gataacatagGTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAA
EST: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGT GTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAA
genomic: CGATGAATGGCATGCAGATTTACTTGGCTGCTGTTCAGAACCGGCTTTGTgtacgtctat ... gataacatagGTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAA
ggattttactaacatgattttgtttccgttgcatgtgtttgctatgataacatagGTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT
attttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctttgtactgttgccagtttataattggtcaacccaggcatggggattttactaacatgattttgtttccgttgcatgtgtttgctatgataacatagGTTTGAAGACCTTGTTCTTCCCCTGTGGAACCTTCTCGAGAATTGCTTCAATCGCCAAGGACAGGCCAATGT
- - - - -ctgttgc
- - - - - - - - - - - - - - - - - - -aggcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgcta