1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catgatgatgccgcacatgctcggcttgtggctgcgaatttcccaagccactggtgactgacatatgtgccactgaatgatttcgtttaattcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCAGGCCTCATGTTGTCACTGAAGATCGTGCGACGGCGCCACCTCAGGCTC
species | Zea mays |
transcript | GRMZM2G027075_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAG GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCEST: gi|71442862|gb|DR823912.1|DR823912
genomic: GTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
EST: CAGTTGATGGTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAG GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCEST: gi|74239884|gb|DT647798.1|DT647798
genomic: CAGTTGATGGTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
EST: CAGTTGATGGTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAN GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
genomic: CAGTTGATGGTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
agccactggtgactgacatatgtgccactgaatgatttcgtttaattcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCAGGCCTCATGTTGTCACTGAAGATCGTGCGACGGCGCCACCTCAGGCTC
ttcatccc CT-rich tract
tttaattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgatgatgccgcacatgctcggcttgtggctgcgaatttcccaagccactggtgactgacatatgtgccactgaatgatttcgtttaattcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCCAGGCCTCATGTTGTCACTGAAGATCGTGCGACGGCGCCACCTCAGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA