1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctaatcgtgatagtccaatgatcagattttaagattgcactagttgcctgatgacttattaatactagctatcagcatctcatgtttggtggtttatcagGGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAGTTCTATCTGCGACACAGAGAAAGCACGGCTACTATAGTTCATGAATATG
species | Zea mays |
transcript | GRMZM2G026869_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCTTG GGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAGEST: gi|6194738|gb|AW146842.1|AW146842
genomic: GAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTGgtaagtggac ... ggtttatcagGGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAG
EST: CAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTG GGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAGEST: gi|71764970|gb|DR962907.1|DR962907
genomic: CAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTGgtaagtggac ... ggtttatcagGGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAG
EST: CAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTG GGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAGEST: gi|78023024|gb|DV491411.1|DV491411
genomic: CAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTGgtaagtggac ... ggtttatcagGGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAG
EST: CAGCTGGAATCATCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTG GGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAGEST: gi|6095632|gb|AW120299.1|AW120299
genomic: CAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTGgtaagtggac ... ggtttatcagGGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAG
EST: CAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTG GGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAGEST: gi|71444034|gb|DR825084.1|DR825084
genomic: CAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTGgtaagtggac ... ggtttatcagGGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAG
EST: CAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTG GGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAGEST: gi|78118115|gb|DV536502.1|DV536502
genomic: CAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTGgtaagtggac ... ggtttatcagGGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAG
EST: CAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTG GGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAGEST: gi|5847510|gb|AW000589.1|AW000589
genomic: CAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTGgtaagtggac ... ggtttatcagGGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAG
EST: CAGCTGGAATCCTCATGCNCCATGCTGTTTGTGATAGAGTTTCCCGCCTG GGCCATCNCGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAG
genomic: CAGCTGGAATCCTCATGCACCATGCTGTTTGTGATAGAGTTTCCCGCCTGgtaagtggac ... ggtttatcagGGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAG
gcctgatgacttattaatactagctatcagcatctcatgtttggtggtttatcagGGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAGTTCTATCTGCGACACAGAGAAAGCACGGCTACTATAGTTCATGAATATG
tattaat putative branch site (score: 11)
atgacttattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaatcgtgatagtccaatgatcagattttaagattgcactagttgcctgatgacttattaatactagctatcagcatctcatgtttggtggtttatcagGGCCATCACGGTGATCTCTTGCCTGAAGAAAATAGGATATTGCTTGCTGAGTTCTATCTGCGACACAGAGAAAGCACGGCTACTATAGTTCATGAATATG
- - - - - - - - - - - - - - - - - -tgcacta
- - - - - - - - - - - - - - - - - - - - - - - cctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttt