1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatggtcgttcgtcaacaataatgctgtcaaacaaatggaaaatggcgttcttctttaataagaacttggtcttggtgtcctgattttcagCGTTTCCCTGCTCCACACGTGAGGGGTTCTTTGCCATGGCCACCTCCGATGTACAGACCTCTCGTTCCTCCAGCACTCGCAGGCAAGAGCCAGCAAGACG
species | Zea mays |
transcript | GRMZM2G026833_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGACCAGGTGGCGGTGACTCCATGCGTGGCAGTGCCAATGGCAGCAGCG CGTTTCCCTGCTCCACACGTGAGGGGTTCTTTGCCATGGCCACCTCCGATGEST: gi|149104530|gb|EE289981.2|EE289981
genomic: CAGACCAGGTGGCGGTGACTCCATGCGTGGCAGTGCCAATGGCAGCAGCGgtaatggtcg ... tgattttcagCGTTTCCCTGCTCCACACGTGAGGGGTTCTTTGCCATGGCCACCTCCGATG
EST: CAGACCAGGTGGCGGTGACTCCATGCGTGGCAGTGCCAATGGCAGCAGCG CGTTTCCCTGCTCCACACGTGAGGGGTTCTTTGCCATGGCCACCTCCGATG
genomic: CAGACCAGGTGGCGGTGACTCCATGCGTGGCAGTGCCAATGGCAGCAGCGgtaatggtcg ... tgattttcagCGTTTCCCTGCTCCACACGTGAGGGGTTCTTTGCCATGGCCACCTCCGATG
tggaaaatggcgttcttctttaataagaacttggtcttggtgtcctgattttcagCGTTTCCCTGCTCCACACGTGAGGGGTTCTTTGCCATGGCCACCTCCGATGTACAGACCTCTCGTTCCTCCAGCACTCGCAGGCAAGAGCCAGCAAGACG
tcctgat putative branch site (score: 3)
ttttc CT-rich tract
ttcttctttaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggtcgttcgtcaacaataatgctgtcaaacaaatggaaaatggcgttcttctttaataagaacttggtcttggtgtcctgattttcagCGTTTCCCTGCTCCACACGTGAGGGGTTCTTTGCCATGGCCACCTCCGATGTACAGACCTCTCGTTCCTCCAGCACTCGCAGGCAAGAGCCAGCAAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA