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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccttggtctctgtctgtcattgaaatcaataagtaatgcaaacaaaaaagcaagaaatgcttcatctgtattattttctgaggaaagttttattttcagGCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACAT

Basic information

species Zea mays
transcript GRMZM2G026767_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026767_T03 (Zea mays), 3'ss of exon 4
lower sequence: Vv18s0001g00180.t01 (Vitis vinifera), 3'ss of exon 4
tccttggtctctgtctgtcattgaaatcaataagtaatgcaaacaaaaaagcaagaaatgcttcatctgtattattttctgaggaaa----gttttat-----tttcagGCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACAT
     |     ||| |   |||||  |    |||| |||    |    | |   |   |||||  ||   | ||  | |||    ||     || |||     ||  ||| ||||||||||| |||||||| || ||||| ||||| ||||||||||| || || || ||||| || |  || || ||    |||
-----gcaaggtgttttatattgatgta---aagtgatgttcgcttgcatggttgtc-tgctttgtcaccaatacatcctgcaataactacattatatgtatgttgtagGAAGGGTTACTCCTGAAAGTGTTATCTTCAGCTTTGGGACTGTACTTCTGGATCTCCTTAGTGGAAAGCATATTCCTCCAAGTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76937605|gb|DV175198.1|DV175198
EST:     AAGCTATAGCACGAACCTAGCATATACACCTCCAGAATATCTGAGAAATG                         GCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTG
genomic: AAGCTATAGCACGAACCTAGCATATACACCTCCAGAATATCTGAGAAATGgtccctatct ... ttattttcagGCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTG
EST: gi|76937335|gb|DV175108.1|DV175108
EST:     AAGCTATAGCACGAACCTAGCATATACACCTCCAGAATATCTGAGAAATG                         GCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTG
genomic: AAGCTATAGCACGAACCTAGCATATACACCTCCAGAATATCTGAGAAATGgtccctatct ... ttattttcagGCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTG
EST: gi|149098700|gb|EE184712.2|EE184712
EST:     AAGCTATAGCACGAACCTAGCATATACACCTCCAGAATATCTGAGAAATG                         GCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTG
genomic: AAGCTATAGCACGAACCTAGCATATACACCTCCAGAATATCTGAGAAATGgtccctatct ... ttattttcagGCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaagcaagaaatgcttcatctgtattattttctgaggaaagttttattttcagGCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACAT
                                           ttttattttc  CT-rich tract
                                       aaagttttattttca  TA-rich tract