1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagtataacatgtgaaaactgctgctgatttgttgcagatttttttcccagtaacttatctagtttcaggtgttcattgtctatctgaagaagaaagaacaaatctaatttcagATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTGACAAAGCTGAGGCAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACG
species | Zea mays |
transcript | GRMZM2G025528_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG ATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTGEST: gi|148994757|gb|EE034229.2|EE034229
genomic: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGgtagtataac ... ctaatttcagATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTG
EST: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG ATGCTCCCAAAGACTTGGEST: gi|148957676|gb|EC903790.2|EC903790
genomic: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGgtagtataac ... ctaatttcagATGCTCCCAAAGACTTGG
EST: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG ATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTGEST: gi|149086713|gb|EE176255.2|EE176255
genomic: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGgtagtataac ... ctaatttcagATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTG
EST: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG ATGCTCCCAAAGEST: gi|148953239|gb|EE152723.2|EE152723
genomic: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGgtagtataac ... ctaatttcagATGCTCCCAAAG
EST: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG ATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTGEST: gi|71330461|gb|DR801989.1|DR801989
genomic: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGgtagtataac ... ctaatttcagATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTG
EST: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG ATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCCTEST: gi|148982279|gb|EE028228.2|EE028228
genomic: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGgtagtataac ... ctaatttcagATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACC-T
EST: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG ATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTGEST: gi|32923995|gb|CF028807.1|CF028807
genomic: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGgtagtataac ... ctaatttcagATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTG
EST: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAG ATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTG
genomic: GACAAGTGGAAATGTGGAACCAAGCAAACAAGCTGTAGACAGAGgtagtataac ... ctaatttcagATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTG
ctagtttcaggtgttcattgtctatctgaagaagaaagaacaaatctaatttcagATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTGACAAAGCTGAGGCAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACG
atctaat putative branch site (score: 58)
aacaaatctaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtataacatgtgaaaactgctgctgatttgttgcagatttttttcccagtaacttatctagtttcaggtgttcattgtctatctgaagaagaaagaacaaatctaatttcagATGCTCCCAAAGACTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTGACAAAGCTGAGGCAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC