1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacagcgaaagtgctagttggcaatcttgtaacgcttaattccgtattctgaatggggcctgcttatcctctgttgactgacgagaatatatactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACATCCTCGCAACTGCTTTCCACCCAGAATTGACATCAGACTCCAGATG
species | Zea mays |
transcript | GRMZM2G023528_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|6020368|gb|AW065296.1|AW065296
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|71318383|gb|DR795955.1|DR795955
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|5714344|gb|AI944329.1|AI944329
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: AATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|5895630|gb|AW036876.1|AW036876
genomic: AATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|32934367|gb|CF039179.1|CF039179
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: TCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACCTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAEST: gi|33467208|gb|CF244257.1|CF244257
genomic: TCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTAC-TGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAA
EST: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|37382875|gb|CF628406.1|CF628406
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|74233030|gb|DT640944.1|DT640944
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|91055148|gb|EB165566.1|EB165566
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|31359368|gb|CD443725.1|CD443725
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: TTCCTGCTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|78021493|gb|DV489880.1|DV489880
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|60340407|gb|DN207380.1|DN207380
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|5804728|gb|AI979698.1|AI979698
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: TTCCTGTTGCCAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACEST: gi|40303169|gb|CK347556.1|CK347556
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
attctgaatggggcctgcttatcctctgttgactgacgagaatatatactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACATCCTCGCAACTGCTTTCCACCCAGAATTGACATCAGACTCCAGATG
gactgac putative branch site (score: 88)
tactttc putative PPT
agaatatatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacagcgaaagtgctagttggcaatcttgtaacgcttaattccgtattctgaatggggcctgcttatcctctgttgactgacgagaatatatactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAACATCCTCGCAACTGCTTTCCACCCAGAATTGACATCAGACTCCAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG