Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttggggatcatatggcatgtgatagtcatattattgaattttgcatcttcaaaggatttgtagttattattaaacacacaaatatgaacaccatgtttcattgcagactgtttctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAAGGAGGGAATGATACATGCCGCGGTGTATTTATACGGGCACCTGCTATAT

Basic information

species Zea mays
transcript GRMZM2G023528_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023528_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g03740.1 (Oryza sativa), 3'ss of exon 4
gtaaatttggggatcatatggcatgtgatagtcatattattgaattttgcatcttcaaaggatttgtagttattattaaacacacaaatatgaacaccatgtttcattgcagactgtttctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAAGGAGGGAATGATACATGCCGCGGTGTATTTATACGGGCACCTGCTATAT
|||| |||| ||||| | |    |||          ||  ||      |||  ||  |      | |  ||  ||||       ||| | |  |    || ||| |      |     |||||||||||||||||||||||| || || ||||| ||||||| |||| | ||||||||||||||||  ||||||||||| || ||||||||||| ||||||||||| |
gtaactttgaggatcgtgttctctgt----------ttgatggccggagcagttttca-----ctatcatttctattgtctcttcaatttt--attttatttttgag-atgaatacactctcttgcagCTTCAAAGCTTTGAAACGGAACTTTCAGTGCCAATGCTTGCAGAGAAGGAAGGAGGGAGCGATACATGCCGTGGCGTATTTATACGAGCACCTGCTATCT

upper sequence: GRMZM2G023528_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA01G28830.1 (Glycine max), 3'ss of exon 3
gtaaatttggggatcatatggcatgtgatagtcatattattgaattttgcatcttcaaaggatttgtagttattattaaacacacaaatatgaacaccatgtttcattgcagactgtttctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAAGGAGGGAATGATACATGCCGCGGTGTATTTATACGGGCACCTGCTATAT
                    | |  |  |      | || |    || |    ||  ||| |    || || || |  |       ||| || | | |||  || | |  | |    | ||  |  || |||||||||||||| |||||||||| |||||| ||||       || ||||||||   ||| ||||  || ||  | ||||| || || ||||| ||  
--------------------gaaattagtgaagggaataatatgcttgg----tttgaagaacaaatattt-ttgtgcactttgataatttggataacat--ttaacta-aaatacatacttatttagATTCAAAGCTTTGAGGCAGAGCTTTCAGTGCCAGAGCTCGTCTCCAAAGAAGGAGGTCCTGAAACATTTCGTGGAATTTTTATTCGTGCCCCTGCAATTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6020368|gb|AW065296.1|AW065296
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|71318383|gb|DR795955.1|DR795955
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|91055149|gb|EB165567.1|EB165567
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|5895630|gb|AW036876.1|AW036876
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|78120474|gb|DV538858.1|DV538858
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|32934367|gb|CF039179.1|CF039179
EST:     CAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCGGTGCCAAAGCTTTCGGAGAAGGAA
genomic: CAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|33467208|gb|CF244257.1|CF244257
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|37382875|gb|CF628406.1|CF628406
EST:     ACCGAAAC-TTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCGGTGCCAAAGCTTTCGGAGAAGGAA
genomic: ACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|74233030|gb|DT640944.1|DT640944
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|71437533|gb|DR818583.1|DR818583
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|149073844|gb|EE162166.2|EE162166
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|31359368|gb|CD443725.1|CD443725
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|74233031|gb|DT640945.1|DT640945
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTTCAA-GCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCCGAGAAGGA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTT-CAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGA
EST: gi|148986692|gb|EE030480.2|EE030480
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA
EST: gi|40303169|gb|CK347556.1|CK347556
EST:     TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG                         CTTCAAAGCTTTGAGACAGAGCTTTCGGTGCCAAAGCTTTCGGAGAAGGAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... tctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattaaacacacaaatatgaacaccatgtttcattgcagactgtttctcttgcagCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAAGGAGGGAATGATACATGCCGCGGTGTATTTATACGGGCACCTGCTATAT
                                        ctgtttctctt  CT-rich tract
            aaatatgaa  TA-rich tract