1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaatttggggatcatatggcatgtgatagtcatattattgaattttgcatcttcaaaggatttgtagttattattaaacacacaaatatgaacaccatgtttcattgcagACTGTTTCTCTTGCAGCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAAGGAGGGAATGATACATGCCGCGGTGTATTTATA
species | Zea mays |
transcript | GRMZM2G023528_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAG ACTGTTTCTCTTGCAGCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAA
genomic: TTGTTGGAGGATTAGATTGTACAGTCCACCGAAACTTTTTTGGGAGTCAGgtaaatttgg ... ttcattgcagACTGTTTCTCTTGCAGCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAA
aaggatttgtagttattattaaacacacaaatatgaacaccatgtttcattgcagACTGTTTCTCTTGCAGCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAAGGAGGGAATGATACATGCCGCGGTGTATTTATA
tttcatt CT-rich tract
ttattattaaacacac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttggggatcatatggcatgtgatagtcatattattgaattttgcatcttcaaaggatttgtagttattattaaacacacaaatatgaacaccatgtttcattgcagACTGTTTCTCTTGCAGCTTCAAAGCTTTGAGACAGAGCTTTCCGTGCCAAAGCTTTCGGAGAAGGAAGGAGGGAATGATACATGCCGCGGTGTATTTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG