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gtaagttacaataatgtgtttggtatagcctagctgccagtgtttctaacactttgttgtatgctacttttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAAATGATACTATGAAGATGGACACAGATGATGCACCAAGTGATCCTGCTG
species | Zea mays |
transcript | GRMZM2G023232_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATA ATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAEST: gi|89251181|gb|DY622967.1|DY622967
genomic: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATAgtaagttaca ... ttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCA
EST: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATA ATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAEST: gi|32945492|gb|CF050311.1|CF050311
genomic: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATAgtaagttaca ... ttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCA
EST: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATA ATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAEST: gi|67021901|gb|CO450650.1|CO450650
genomic: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATAgtaagttaca ... ttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCA
EST: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATA ATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAEST: gi|67016035|gb|CO444784.1|CO444784
genomic: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATAgtaagttaca ... ttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCA
EST: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATA ATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAEST: gi|67025370|gb|CO454119.1|CO454119
genomic: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATAgtaagttaca ... ttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCA
EST: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATA ATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAEST: gi|18175444|gb|BM350773.1|BM350773
genomic: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATAgtaagttaca ... ttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCA
EST: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATA ATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAEST: gi|18163486|gb|BM333325.1|BM333325
genomic: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATAgtaagttaca ... ttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCA
EST: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATA ATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCEST: gi|33094410|gb|CF054404.1|CF054404
genomic: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATAgtaagttaca ... ttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGC
EST: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATA ATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAEST: gi|22520708|gb|BU079519.1|BU079519
genomic: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATAgtaagttaca ... ttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCA
EST: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATA ATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAEST: gi|78106114|gb|DV524532.1|DV524532
genomic: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATAgtaagttaca ... ttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCA
EST: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATA ATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCA
genomic: TGAAAGTGCGTCTCAACATCCATGGGACCGTTACAGTTGATTCAGCAATAgtaagttaca ... ttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCA
atagcctagctgccagtgtttctaacactttgttgtatgctacttttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAAATGATACTATGAAGATGGACACAGATGATGCACCAAGTGATCCTGCTG
ttctaac putative branch site (score: 185)
ctactttt putative PPT
tttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttacaataatgtgtttggtatagcctagctgccagtgtttctaacactttgttgtatgctacttttggatgcagATGCTGGAGGATGATGTGGAAGTTCCAGTTTCATCTGCAAATGAAGCTCCAAATGATACTATGAAGATGGACACAGATGATGCACCAAGTGATCCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG