1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caaagtgatatttgtatcagtagttgcaattgatggcactgaacctgcttaaatgttttgagacaatcttaagccatgcgcttctttttatcatttgcagGCCGCAGCAAGAGGGGAGGAGGGGATGACCCTGTTCTTTGTGTGCTGCAGCCCTGATTGTGGTCATCGGTGGAGGGAATGATGCGATGAAATCTTCGCTC
species | Zea mays |
transcript | GRMZM2G023028_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGACTGTCCGCTGCAATCTCTGTGGGCATGGAGAGGCTGTTTTCTTCCAG GCCGCAGCAAGAGGGGAGGAGGGGATGACCCTGTTCTTTGTGTGCTGCAGCEST: gi|40286997|gb|CK327389.1|CK327389
genomic: AGACTGTCCGCTGCAATCTCTGTGGGCATGGAGAGGCTGTTTTCTTCCAGgtctttttct ... tcatttgcagGCCGCAGCAAGAGGGGAGGAGGGGATGACCCTGTTCTTTGTGTGCTGCAGC
EST: AGACTGTCCGCTGCAATCTCTGTGGGCATGGAGAGGCTGTTTTCTTCCAG GCCGCAGCAAGAGGGGAGGAGGGGATGACCCTGTTEST: gi|211377826|gb|FL433704.1|FL433704
genomic: AGACTGTCCGCTGCAATCTCTGTGGGCATGGAGAGGCTGTTTTCTTCCAGgtctttttct ... tcatttgcagGCCGCAGCAAGAGGGGAGGAGGGGATGACCCTGTT
EST: AGACTGTCCGCTGCAATCTCTGTGGGCATGGAGAGGCTGTTTTCTTCCAG GCCGCAGCAAGAGGGGAGGAGGGGATGACCCTGTTCTTTGTGTGCTGCAGC
genomic: AGACTGTCCGCTGCAATCTCTGTGGGCATGGAGAGGCTGTTTTCTTCCAGgtctttttct ... tcatttgcagGCCGCAGCAAGAGGGGAGGAGGGGATGACCCTGTTCTTTGTGTGCTGCAGC
tgcttaaatgttttgagacaatcttaagccatgcgcttctttttatcatttgcagGCCGCAGCAAGAGGGGAGGAGGGGATGACCCTGTTCTTTGTGTGCTGCAGCCCTGATTGTGGTCATCGGTGGAGGGAATGATGCGATGAAATCTTCGCTC
cttctttttatcattt CT-rich tract
ttctttttatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaagtgatatttgtatcagtagttgcaattgatggcactgaacctgcttaaatgttttgagacaatcttaagccatgcgcttctttttatcatttgcagGCCGCAGCAAGAGGGGAGGAGGGGATGACCCTGTTCTTTGTGTGCTGCAGCCCTGATTGTGGTCATCGGTGGAGGGAATGATGCGATGAAATCTTCGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - -agttgca
- - - - - - - - - - - - - - attgatg
- - - - - - - - - - - - - - - - - - cactgaa
- - - - - - - - - - - - - - - - - - - - - -cctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agccatg