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gtgaatatgcccagcctcttgcaactgcgttttgcagatgtcattcttcatgcacaagagcaattttgttgtttgtattcaccatggaaaaattgcagGTCAGAGAGATGGTAACAGTCTTGGACCTAGATGTATTATTTTACCCCTGTCCTAAAAAAGGCCCAACATTCCGACCTAAAGTCCTCGAAATGGGTGGAA
species | Zea mays |
transcript | GRMZM2G022866_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGTTGTCCATTTTGTCGGAAG GTCAGAGAGATGGTAACAGTCTTGGACCTAGATGTATTATTTTACCCCTGTEST: gi|71328184|gb|DR800730.1|DR800730
genomic: TGAAGGTTGTCCATTTTGTCGGAAGgtgaatatgc ... aaaattgcagGTCAGAGAGATGGTAACAGTCTTGGACCTAGATGTATTATTTTACCCCTGT
EST: TGAAGGTTGTCCATTTTGTCGGAAG GTCAGAGAGATGGTAACAGTCTTGGACCTAGATGTATTATTTTACCCCTGTEST: gi|50338487|gb|CO533613.1|CO533613
genomic: TGAAGGTTGTCCATTTTGTCGGAAGgtgaatatgc ... aaaattgcagGTCAGAGAGATGGTAACAGTCTTGGACCTAGATGTATTATTTTACCCCTGT
EST: TGAAGGTTGTCCATTTTGTCGGAAG GTCAGAGAGATGGTAACAGTCTTGGACCTAGATGTATTATTTTACCCCTGTEST: gi|101399628|gb|EB821660.1|EB821660
genomic: TGAAGGTTGTCCATTTTGTCGGAAGgtgaatatgc ... aaaattgcagGTCAGAGAGATGGTAACAGTCTTGGACCTAGATGTATTATTTTACCCCTGT
EST: TGAGGGT-GTCCATTTTGTCGGAAG GTCAGAGAGATGGTAACAGTCTTGGACCTAGATGTATTATTTTACCCCTGT
genomic: -GAAGGTTGTCCATTTTGTCGGAAGgtgaatatgc ... aaaattgcagGTCAGAGAGATGGTAACAGTCTTGGACCTAGATGTATTATTTTACCCCTGT
ttcttcatgcacaagagcaattttgttgtttgtattcaccatggaaaaattgcagGTCAGAGAGATGGTAACAGTCTTGGACCTAGATGTATTATTTTACCCCTGTCCTAAAAAAGGCCCAACATTCCGACCTAAAGTCCTCGAAATGGGTGGAA
aattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatatgcccagcctcttgcaactgcgttttgcagatgtcattcttcatgcacaagagcaattttgttgtttgtattcaccatggaaaaattgcagGTCAGAGAGATGGTAACAGTCTTGGACCTAGATGTATTATTTTACCCCTGTCCTAAAAAAGGCCCAACATTCCGACCTAAAGTCCTCGAAATGGGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA