1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...gcacatatttgatacctgtattgcatgatttttcagttacttacattctgtatttctgtaaatcaaaatgctattgaaaaatatcatgtttcttctgtagAATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGACTCATTGAATCAAAATCAGTTGGCACCTTTACACCAATGCAAAAGCTAG
species | Zea mays |
transcript | GRMZM2G021846_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTGTACTAACCACAAG AATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGAEST: gi|13237210|gb|BG355224.1|BG355224
genomic: ATTGTACTAACCACAAGgttggctgtt ... tcttctgtagAATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGA
EST: GAGTCCAAGCTAGTGTTTCTGCAAAATTAGAAGATTGTACTAACCACAAG AATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCACAATTCCGGA
genomic: GAGTCCAAG-TAGTGTTTCTGCAAAATTAGAAGATTGTACTAACCACAAGgttggctgtt ... tcttctgtagAATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGA
ttctgtatttctgtaaatcaaaatgctattgaaaaatatcatgtttcttctgtagAATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGACTCATTGAATCAAAATCAGTTGGCACCTTTACACCAATGCAAAAGCTAG
tgtttcttct CT-rich tract
tattgaaaaatatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacatatttgatacctgtattgcatgatttttcagttacttacattctgtatttctgtaaatcaaaatgctattgaaaaatatcatgtttcttctgtagAATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGACTCATTGAATCAAAATCAGTTGGCACCTTTACACCAATGCAAAAGCTAG
gcacata
- - - - - - -acctgta
- - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - -cattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtt