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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcacatatttgatacctgtattgcatgatttttcagttacttacattctgtatttctgtaaatcaaaatgctattgaaaaatatcatgtttcttctgtagAATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGACTCATTGAATCAAAATCAGTTGGCACCTTTACACCAATGCAAAAGCTAG

Basic information

species Zea mays
transcript GRMZM2G021846_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32926116|gb|CF030928.1|CF030928
EST:     ATTGTACTAACCACAAG                         AATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGA
genomic: ATTGTACTAACCACAAGgttggctgtt ... tcttctgtagAATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGA
EST: gi|13237210|gb|BG355224.1|BG355224
EST:     GAGTCCAAGCTAGTGTTTCTGCAAAATTAGAAGATTGTACTAACCACAAG                         AATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCACAATTCCGGA
genomic: GAGTCCAAG-TAGTGTTTCTGCAAAATTAGAAGATTGTACTAACCACAAGgttggctgtt ... tcttctgtagAATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgtatttctgtaaatcaaaatgctattgaaaaatatcatgtttcttctgtagAATATTGAGGCCTGGGCAACAGATTCTTCTAAGAAAATTCAGAATTCCGGACTCATTGAATCAAAATCAGTTGGCACCTTTACACCAATGCAAAAGCTAG
                                         tgtttcttct  CT-rich tract
                          tattgaaaaatatcat  TA-rich tract