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gtactactactctctgccccaagaaaactctactttaagtagcacatataccagtaaatcagtaatgccatggccacatgactaatcctgcctctttgtttaactgctctgttctttatcagCATGGAAGAAGCCGAAGCACAGTGTGCATTGCTTAATTTTTCTTCCTTGTGT
species | Zea mays |
transcript | GRMZM2G021674_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAGAAGCCAAGCATCTCGGGTTGGCCCTTGGCATCCCTTGCTTGGATGG CATGGAAGAAGCCGAAGCACAGTGTGCATTGCTTAATTTTTCTTCCTTGTGEST: gi|71774851|gb|DR972729.1|DR972729
genomic: AAAGAAGCCAAGCATCTCGGGTTGGCCCTTGGCATCCCTTGCTTGGATGGgtactactac ... tctttatcagCATGGAAGAAGCCGAAGCACAGTGTGCATTGCTTAATTTTTCTTCCTTGTG
EST: AAAGAAGCCAAGCATCTCGGGTTGGCCCTTGGCATCCCTTGCTTGGATGG CATGGAAGAAGCCGAAGCACAGTGTGCATTGCTTAATTTTTCTTCCTTGTGEST: gi|71326369|gb|DR799871.1|DR799871
genomic: AAAGAAGCCAAGCATCTCGGGTTGGCCCTTGGCATCCCTTGCTTGGATGGgtactactac ... tctttatcagCATGGAAGAAGCCGAAGCACAGTGTGCATTGCTTAATTTTTCTTCCTTGTG
EST: AAGAAGCCAAGCATCTCGGGTTGGCCCTTGGCATCCCCTTGCTTGGATGG GATGGAAAAAGCCGAAGCACAGTGTGCATTGCTTAATTTTTCTTCCEST: gi|78115114|gb|DV533502.1|DV533502
genomic: AAGAAGCCAAGCATCTCGGGTTGGCCCTTGGCATCCC-TTGCTTGGATGGgtactactac ... tctttatcagCATGGAAGAAGCCGAAGCACAGTGTGCATTGCTTAATTTTTCTTCC
EST: AAAGAAGCCAAGCATCTCGGGTTGGCCCTTGGCATCCCTTGCTTGGATGG CATGGAAGAAGCCGAAGCACAGTGTGCATTGCTTAATTTTTCTTCCTTGTG
genomic: AAAGAAGCCAAGCATCTCGGGTTGGCCCTTGGCATCCCTTGCTTGGATGGgtactactac ... tctttatcagCATGGAAGAAGCCGAAGCACAGTGTGCATTGCTTAATTTTTCTTCCTTGTG
ccatggccacatgactaatcctgcctctttgtttaactgctctgttctttatcagCATGGAAGAAGCCGAAGCACAGTGTGCATTGCTTAATTTTTCTTCCTTGTGT
ctgctctgttcttt CT-rich tract
tttgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactactactctctgccccaagaaaactctactttaagtagcacatataccagtaaatcagtaatgccatggccacatgactaatcctgcctctttgtttaactgctctgttctttatcagCATGGAAGAAGCCGAAGCACAGTGTGCATTGCTTAATTTTTCTTCCTTGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC