1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttatgctttgttcaagcgatcctacaatatatgtttgattgatagccgagtgtttctttgtactggggttcttatgtgtgctatatatggtgtcttgcagGGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCGGAACATGGTAAATGGTGGCGAAGAATCCCTTGAAGAAACCAGAACAGAT
species | Zea mays |
transcript | GRMZM2G020775_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAG GGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCGEST: gi|19057851|gb|BM736518.1|BM736518
genomic: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAGgtatccccct ... tgtcttgcagGGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCG
EST: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAG GGGACAGATGGGCTTATCTGCGGAGCAGCAGAAGCGAGCTCTCGAGCTTCGEST: gi|60352765|gb|DN219738.1|DN219738
genomic: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAGgtatccccct ... tgtcttgcagGGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCG
EST: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAG GGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCGEST: gi|211389154|gb|FL356157.1|FL356157
genomic: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAGgtatccccct ... tgtcttgcagGGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCG
EST: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAG GGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCGEST: gi|22490761|gb|BU050684.1|BU050684
genomic: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAGgtatccccct ... tgtcttgcagGGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCG
EST: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAG GGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCGEST: gi|74232968|gb|DT640882.1|DT640882
genomic: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAGgtatccccct ... tgtcttgcagGGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCG
EST: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAG GGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCGEST: gi|19058328|gb|BM736995.1|BM736995
genomic: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAGgtatccccct ... tgtcttgcagGGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCG
EST: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAG GGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCG
genomic: TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCATCTATGGAGgtatccccct ... tgtcttgcagGGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCG
ccgagtgtttctttgtactggggttcttatgtgtgctatatatggtgtcttgcagGGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCGGAACATGGTAAATGGTGGCGAAGAATCCCTTGAAGAAACCAGAACAGAT
tatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgctttgttcaagcgatcctacaatatatgtttgattgatagccgagtgtttctttgtactggggttcttatgtgtgctatatatggtgtcttgcagGGGACAGATGGGTTTATCTGTGGAGCAGCAGAAGCGAGCTCTCGAGCTTCGGAACATGGTAAATGGTGGCGAAGAATCCCTTGAAGAAACCAGAACAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-tatgctt
- - - - - - - - - - - - - - - atgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcta