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gtaagctacagttgctctcctccaatcattcaagcttcctagttgcactattctgctaactgggttgcaattatgttttcagATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAG
species | Zea mays |
transcript | GRMZM2G020721_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATT ATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAAEST: gi|148986950|gb|EE030765.2|EE030765
genomic: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATTgtaagctaca ... atgttttcagATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAA
EST: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATT ATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAAEST: gi|71448158|gb|DR829208.1|DR829208
genomic: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATTgtaagctaca ... atgttttcagATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAA
EST: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATT ATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAAEST: gi|211035508|gb|FL319750.1|FL319750
genomic: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATTgtaagctaca ... atgttttcagATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAA
EST: TTCATGGACCAGTTGCTTCTTCTGGAGAACCGTTTAACACTGAGGGCAAT ATCTGAATTTGGAGGGTATCTACTTTATTTTTACATATGTGATCGTACAAAEST: gi|211342552|gb|FL342004.1|FL342004
genomic: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATTgtaagctaca ... atgttttcagATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAA
EST: TTCATGGACCAGTTGCTTCTTCTGGAGAACCGTTTAACACTGAGGGCAAT ATCTGAATTTGGAGGGTATCTACTTTATTTTTACATATGTGATCGTACAAAEST: gi|211541629|gb|FL367734.1|FL367734
genomic: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATTgtaagctaca ... atgttttcagATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAA
EST: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATT ATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAAEST: gi|91875375|gb|EB405332.1|EB405332
genomic: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATTgtaagctaca ... atgttttcagATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAA
EST: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATT ATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAAEST: gi|211440830|gb|FL365412.1|FL365412
genomic: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATTgtaagctaca ... atgttttcagATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAA
EST: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATT ATCTGAATTTGGGAGGT-ATCTACTTTATTTTTACATATGTGATCGTAACA
genomic: TTCATGGACCAGTTGCTTCTTCTGGAGAATCGTTTAACACTGAGGGCATTgtaagctaca ... atgttttcagATCTGAATTTGG-AGGTTATCTACTTTATTTTTACATATGTGATCGTA-CA
attcaagcttcctagttgcactattctgctaactgggttgcaattatgttttcagATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAG
tgctaac putative branch site (score: 1)
tgttttc putative PPT
aattatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctacagttgctctcctccaatcattcaagcttcctagttgcactattctgctaactgggttgcaattatgttttcagATCTGAATTTGGAGGTTATCTACTTTATTTTTACATATGTGATCGTACAAACTTGCTTGGAGAGTCTGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA