1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgctatatggaccccttcatgcaaaaaatgatatcatttttaataattttatttgcagtttacaactgggatgcttctctaacctttaaacaatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTTTAATTTTAACTGTTGCCAGTGAGGTTTTTGAGGAATCAGGGAGGACAC
species | Zea mays |
transcript | GRMZM2G020574_T07 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATTCGGCAGTGATGGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG GATGATGGAACTGGACGTGTTTTATGTGGTCGGTGCTCEST: gi|32787495|gb|CD939987.1|CD939987
genomic: AGATTCGGCAGTGATG-CTTTCTGTTAGCAAAGAGGTTCCATGGTATCTGgtaaataact ... caatcactagGATGATGGAACTGGACGTGTTT-ATGTGGTCGGTGCTC
EST: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG GATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTEST: gi|32796673|gb|CD948909.1|CD948909
genomic: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTGgtaaataact ... caatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
EST: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG GATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTEST: gi|149102431|gb|EE287794.2|EE287794
genomic: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTGgtaaataact ... caatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
EST: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG GATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTEST: gi|71448689|gb|DR829739.1|DR829739
genomic: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTGgtaaataact ... caatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
EST: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG GATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTEST: gi|71438907|gb|DR819957.1|DR819957
genomic: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTGgtaaataact ... caatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
EST: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG GATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTEST: gi|149031458|gb|EE286351.2|EE286351
genomic: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTGgtaaataact ... caatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
EST: GAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG GATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTEST: gi|149076432|gb|EE165055.2|EE165055
genomic: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTGgtaaataact ... caatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
EST: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG GATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTEST: gi|89764186|gb|DY691084.1|DY691084
genomic: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTGgtaaataact ... caatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
EST: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG GATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
genomic: AAGATTCGGCAGTGATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTGgtaaataact ... caatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGT
attttatttgcagtttacaactgggatgcttctctaacctttaaacaatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTTTAATTTTAACTGTTGCCAGTGAGGTTTTTGAGGAATCAGGGAGGACAC
ctctaac putative branch site (score: 2)
tttaaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctatatggaccccttcatgcaaaaaatgatatcatttttaataattttatttgcagtttacaactgggatgcttctctaacctttaaacaatcactagGATGATGGAACTGGACGTGTTTATGTGGTCGGTGCTCGTTCTGCAGCTGGTTTAATTTTAACTGTTGCCAGTGAGGTTTTTGAGGAATCAGGGAGGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA