Sequence
atgc intronic sequence ATGC exonic sequencegttgggttgtttcctgatgttccagaacttcgtttctttgttaattgtcttttttcttaatagagcttattaataatttattacaatttttcctattatattgcagGTATTTGGATTTGGGGTACTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G019361_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 3'ss of exon 4
gttgggttgtttcctgatgttccagaacttcgtttctttgttaattgtcttttttcttaatagagcttattaataatttattacaatttttcctattatattgcagGTATTTGGATTTGGGGTACTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATC
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gtggacatcttttttgcttgtttt-aatgtctttaatctgt--att-tctatttgctgattgatgtcta---acaagctataatcatacttgttcaattgttacagGTATATGGATTTGGGGTACACCTGTTGAAATGGACATTGATGGTTCAAAAGTGTCTGTCCTTTACCTTGATACTGAAGGATTTGAGAGTGTTGGGAAGTC
upper sequence: GRMZM2G019361_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 4
gttgggttgtttcctgatgttccagaacttcgtttctttgttaattgtcttttttcttaatagagcttattaata-atttattacaatttttcctattatat-tgcagGTATTTGGATTTGGGGTACTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATC
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---------------gtagatagaaattactatctttctcatggatatgcttatt-tggatataatattttacaacatattttttaatcttttggttcacatctccagGAATATGGGTTTGGGGAACACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTC
upper sequence: GRMZM2G019361_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 3
gttgggttgtttcctgatgttccagaacttcgtttctttgttaattgtcttttttcttaatagagcttatta-ataatttattacaatttttcctattatat-tgcagGTATTTGGATTTGGGGTACTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATC
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---------------gtagatagaaattaccatctttctcgtggatatgcttaat-tggatataatattttatagtatattttttaatcttttggttcacatcttcagGAATATGGGTTTGGGGAACACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31361636|gb|CD445993.1|CD445993EST: GTTTTGGAGTTGGTCATATGCGAGATACTAAAACTAAAG GTATTTGGATTTGGGGTACTCCTGTTGAGATGGATGTTGATGGTTCCAAAG
genomic: GTTTTGGAGTTGGTCATATGCGAGATACTAAAACTAAAGgttgggttgt ... tatattgcagGTATTTGGATTTGGGGTACTCCTGTTGAGATGGATGTTGATGGTTCCAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttcttaatagagcttattaataatttattacaatttttcctattatattgcagGTATTTGGATTTGGGGTACTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATC
tattaat putative branch site (score: 2)
tttttcctatt putative PPT
agcttattaataattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgggttgtttcctgatgttccagaacttcgtttctttgttaattgtcttttttcttaatagagcttattaataatttattacaatttttcctattatattgcagGTATTTGGATTTGGGGTACTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG