Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgattcgtgctattatctatatgacattaaatactcagcttcaaagaatcatgtcatcaaaacatcatacttagagttacaaacttactgctcgcttcagATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAAGGGATAAAAAAAGTAGTCAATGCAGTCTCTGTCATAGTGGGGCCAAAGG

Basic information

species Zea mays
transcript GRMZM2G019358_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019358_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g13970.2 (Oryza sativa), 3'ss of exon 4
---tgattcgtgctattatctatatgac-attaaatactcagcttcaaagaatcatgtcatcaaaacatcatacttagagttacaaacttactgctc-gcttcagATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAAGGGATAAAAAAAGTAGTCAATGCAGTCTCTGTCATAGTGGGGCCAAAGG
   |  || |   |||  | ||| ||   ||| |||  ||  |  |    ||    | |   |  |    ||| ||| | |   ||| || ||  |  |  |||||||||||||||||| || |||||| || |||||||||| |||   ||||||||||| || ||||| || |||||||| || || ||||| ||||||||||
tgctagtttgca-tatggtttatgtggttattgaatcttccacacctgtaaa----gacggaagtattgaatatttatattattaaaatttctattttgtgtcagATCATAGGAGATGTCACAAAGGAAAATTCACTTGATCCCAAGTACTTCAAAGGGATTAAGAAAGTGGTAAATGCAGTGTCAGTTATAGTTGGGCCAAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211345086|gb|FL234327.1|FL234327
EST:     CTAGAAATGTAGACAGGGCAAG-AGCATGTTGGGGGCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGG
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGG
EST: gi|211349887|gb|FL234353.1|FL234353
EST:     CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
EST: gi|211345091|gb|FL234332.1|FL234332
EST:     CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
EST: gi|148936820|gb|EC880961.2|EC880961
EST:     CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
EST: gi|211345089|gb|FL234330.1|FL234330
EST:     CTAGAAATGTAGACA-GGCAAGGAGCATGTTGGGGGCGGATGTACCTCTG                         ATCATAGGAGATGTTACGA
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGA
EST: gi|211347484|gb|FL234337.1|FL234337
EST:     CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGGAAG
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGGAAG
EST: gi|211345087|gb|FL234328.1|FL234328
EST:     CTAGAAATGTAGACA-GGCAAGGAGCATGTTGGGGGCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGGAGGATACACTTNGATCCTAAGCTATTCAA
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGGAAGATACACTT-GATCCTAAGCTATTCAA
EST: gi|211349886|gb|FL234352.1|FL234352
EST:     CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTG                         ATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA
genomic: CTAGAAATGTAGACAAGGCAAGGAGCATGTTGGGGCCGGATGTACCTCTGgtaggccact ... ctcgcttcagATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatcatgtcatcaaaacatcatacttagagttacaaacttactgctcgcttcagATCATAGGAGATGTTACGAAGGAAGATACACTTGATCCTAAGCTATTCAAAGGGATAAAAAAAGTAGTCAATGCAGTCTCTGTCATAGTGGGGCCAAAGG
                                    aacttac  putative branch site (score: 2)
                                             ctcgcttc  putative PPT
          atcaaaa  TA-rich tract