Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggactctttgtggaacctaggctcatgctttgtcttcctaaggaattttgttgtttttaatataagttacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG

Basic information

species Zea mays
transcript GRMZM2G019325_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019325_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g52361.1 (Oryza sativa), 3'ss of exon 4
gtaagtggactctttgtggaacctaggctcatgctttgtcttcctaaggaattttgttgtttttaatataagttacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG
| ||||  ||  ||  ||||  |||  || ||| ||  | | | |      |||     ||| | |  |  ||| ||     ||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
gcaagtaaacaatt-atggattcta--cttatgtttcttttccttttt---tttccccatttctgacttgggttgca-----gGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAG

upper sequence: GRMZM2G019325_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os07g37780.1 (Oryza sativa), 3'ss of exon 4
gtaagtggactctttgtggaacctaggctcatgctttgtcttcctaaggaattttgttgtttttaatataagtt----acatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG
    ||  |||     ||||   ||  || ||| ||  | |||||        || |    |    |  ||       || |  ||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||| |||||||||||||             
----gtaaactacc-atggattatatacttatgtttcct-ttccttttctccgttctaacatagGGTGCAAACCTCCCACCTTGCAGGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCA-------------

upper sequence: GRMZM2G019325_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT3G48930.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtggactctttgtggaacctaggctcatgctttgtcttcctaaggaattttgttgtttttaatataagttacat-cacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG
|||| |  |  | || |   || |     |||     ||||| |  |   || ||   |    ||||||   ||   | |  |||||||| |||||||| || |||||||| |||||  |||| |||||||||||||| |||||||| |||||| ||||||||||||| |||||
gtaaattcatacattctcatacttctttccataga--gtcttacacattgatgtttaagaaagtaatatcctttttgttcttagGTATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCACCATGCTTCCGTGTTAAGGAAGGAGACCATATCATCATTGGCCAATGCAG

upper sequence: GRMZM2G019325_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT5G23740.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtggactctttgtggaacctaggctcatgctttgtcttcctaagga-attttgttgtttttaata-----------taagttacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG
||||||  ||  | ||  ||||||| | || || |    || |  || || ||    |   |  | |||           ||| ||       || ||||| ||||| || |||||||| || || ||  |||| || || |||||||| |||||||| |||||||||||||||||||| |||||
gtaagt--acattgtgatgaacctatgttcttgatagagctgcgcaaagatataacatcaatgctgataaacgattatcttaaatttttcattagATATGAGAAGAGACATTCCAACATCCCTGCCCATGTCTCACCGTGTTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAATGCAG

upper sequence: GRMZM2G019325_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv04s0008g06220.t01 (Vitis vinifera), 3'ss of exon 4
---gtaagtggactctttgtg-gaacctaggctcat--gctttgtcttcctaaggaattttgttgtttttaatataagttacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG
   | ||  |   |  |||   ||| ||  | |  |  |  |  | |  ||         | |  | || |||   | |  ||    || ||||| ||||||||||| || || ||||| || || ||||||||||||||||| || || || || ||||| || ||||||||||||||
gtaggaaccgatttaattgaatgaatctttgtttttcgggctcctttctcttgtatggaatataatattaaattgtattgtcactctagATATGAGAAGAGGCACTCAAATATACCAGCACATATATCCCCATGCTTCCGTGTCAAAGAGGGTGATCATGTTATTATTGGCCAGTGCAG

upper sequence: GRMZM2G019325_T01 (Zea mays), 3'ss of exon 4
lower sequence: Vv11s0118g00680.t01 (Vitis vinifera), 3'ss of exon 4
----------------gtaagtg-gactctttgtggaacctaggctcatgctttgtcttcctaaggaattttgttgtttttaatataagttacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG
                 ||  || || |   | |     ||   | ||   |||| |||   ||| | ||      |||||  | |  | | |||  ||| ||||| ||||||||||| |||||||| |||||||  || ||||||||||||||||||||||| || ||||| || ||||||||||||||
gcatgttcctccagttatagttgtgaatgggtatttttactttccccagaatttg-cttttcaagtagttgaccattttttcttctttgctgcatt-cagATATGAGAAGAGGCACTCAAACATTCCTGCTCACACATCGCCATGCTTCCGTGTGAAGGAAGGAGATCATGTTATTATTGGCCAGTGCAG

upper sequence: GRMZM2G019325_T01 (Zea mays), 3'ss of exon 4
lower sequence: EFJ07974 (Selaginella moellendorffii), 3'ss of exon 4
------gtaagtggactctttgtggaacctaggctcatgctttgtcttcctaaggaattttgttgtttttaatataagttacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG
      ||  |   |   | |    |   |   ||   || | |   | ||   |   ||          || ||   ||   |  ||||||||||||||||||||| ||| |  |||||||  | || || ||||| ||||| |||||||| ||| | || ||| | |||||||||||
gtgagtgttggcccaagttcttccaagtttcttctttcgcctcgcgattctctcgcgattctcatccagaaaaatctcttttttttcagGTATGAAAAGAGGCACTCAAACGTGGCAGCTCATGTGTCGCCGTGCTTTCGTGTCAAGGAAGGAGACAAAGTGATCCTCGGCCAGTGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26557621|gb|CA829856.1|CA829856
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|29545130|gb|CB605308.1|CB605308
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|21760219|gb|BQ635760.1|BQ635760
EST:     ACCATCATTGTTCGCAGGAACTACCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|30087837|gb|CB886043.1|CB886043
EST:     ACCATCATTGTTCGCAGGAACTAGCTCCACTTTGTTAAGAAATACCAGAG                         GTATGNNNNNNNGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211316810|gb|FL363635.1|FL363635
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211392169|gb|FL368055.1|FL368055
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|149105111|gb|EE290594.2|EE290594
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211396223|gb|FL320945.1|FL320945
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211362196|gb|FL333559.1|FL333559
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|29544998|gb|CB605176.1|CB605176
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|71300930|gb|DR786493.1|DR786493
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|28931312|gb|CB334673.1|CB334673
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|29543508|gb|CB603890.1|CB603890
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211147962|gb|FL321977.1|FL321977
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|32164858|gb|CD670176.1|CD670176
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|29544783|gb|CB605391.1|CB605391
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|30087838|gb|CB886044.1|CB886044
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|28931240|gb|CB334601.1|CB334601
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211091709|gb|FL353554.1|FL353554
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211331210|gb|FL345210.1|FL345210
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211459963|gb|FL331080.1|FL331080
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATTAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|84980043|gb|DW530392.1|DW530392
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|31664381|gb|CD573106.1|CD573106
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|29577019|gb|CB617131.1|CB617131
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211310292|gb|FL341193.1|FL341193
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|31664642|gb|CD573575.1|CD573575
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|31909700|gb|CD651051.1|CD651051
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|108953932|gb|EC364935.1|EC364935
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|94480450|gb|EB709408.1|EB709408
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|9566290|gb|BE475799.1|BE475799
EST:     ACCATCATTGTTCGCAGGAACTACCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|30088068|gb|CB886273.1|CB886273
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|29167977|gb|CB411237.1|CB411237
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|28187994|gb|CB179604.1|CB179604
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|30088049|gb|CB886254.1|CB886254
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|9255069|gb|BE345537.1|BE345537
EST:     ACCATCATTGTTCGCAGGAACTACCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|29130634|gb|CB381338.1|CB381338
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|32800936|gb|CD953172.1|CD953172
EST:     TAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: TAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|29130364|gb|CB381068.1|CB381068
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|29543646|gb|CB604026.1|CB604026
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|31664387|gb|CD573112.1|CD573112
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|193502900|gb|AM937550.1|AM937550
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|28931218|gb|CB334579.1|CB334579
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|30088067|gb|CB886272.1|CB886272
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211304600|gb|FL360889.1|FL360889
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211448502|gb|FL309597.1|FL309597
EST:     ACCATCATTGTKCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAMAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|71300932|gb|DR786494.1|DR786494
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211325059|gb|FL357893.1|FL357893
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|71765310|gb|DR963247.1|DR963247
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCACAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|28576053|gb|CB281945.1|CB281945
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|30031970|gb|CB833821.1|CB833821
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|29544607|gb|CB604987.1|CB604987
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|9461913|gb|BE453967.1|BE453967
EST:     ACCATCATTGTTCGCAGGAACTACCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|32165061|gb|CD670379.1|CD670379
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|91053268|gb|EB163686.1|EB163686
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|91870272|gb|EB400791.1|EB400791
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCCTCCC
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCC-
EST: gi|28910286|gb|CB331363.1|CB331363
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|50338803|gb|CO533929.1|CO533929
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|31664386|gb|CD573111.1|CD573111
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAAACACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|14364918|gb|BG946729.1|BG946729
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211021411|gb|FL344427.1|FL344427
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGNACTCCAACATTCCAGCTCACATCTCCCCATGCTTNCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|30306456|gb|CD001129.1|CD001129
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|89758418|gb|DY687604.1|DY687604
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|101393936|gb|EB818901.1|EB818901
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|30088050|gb|CB886255.1|CB886255
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211349793|gb|FL343923.1|FL343923
EST:     ACCATCATTGTTCGCAGGAACTATCTCMACTTTGTTAAGAAMTACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTWCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|29946646|gb|CB816254.1|CB816254
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|211107962|gb|FL352613.1|FL352613
EST:     ACCATCATTGTTCGCAGGAACTACCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|50324367|gb|CO519493.1|CO519493
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|31664382|gb|CD573107.1|CD573107
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|4804561|gb|AI665584.2|AI665584
EST:     ACCATCATTGTTCGCAGGAACTACCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|15554136|gb|BI644134.1|BI644134
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|30307088|gb|CD001761.1|CD001761
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
EST: gi|29577159|gb|CB617271.1|CB617271
EST:     ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAG                         GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG
genomic: ACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 1212

TCAGAGGCAGAATTATTGCTGGAACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 848

TCAGAGGCAGAATTATTGCTGGAACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 763

TCAGAGGCAGAATTATTGCTGGAACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 651

TCAGAGGCAGAATTATTGCTGGAACATGCCACAGTGCTAAGATGAACAGAACCATCATTGTTCGCAGGAACTATCTCCACTTTGTTAAGAAATACCAGAGgtaagtggac ... tacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgctttgtcttcctaaggaattttgttgtttttaatataagttacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG
                                ttttaat  putative branch site (score: 651)
                     aattttgttgttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtggactctttgtggaacctaggctcatgctttgtcttcctaaggaattttgttgtttttaatataagttacatcacagGTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA