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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatatccgatgttgacaacctctgagatgcgtttagtttagtctttaaaagttatttgcgattttggcattttgcttttaaccatcgcgaagctgatatgatataattgtcatttaactggtttgcttgtgtatatgaagGAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG

Basic information

species Zea mays
transcript GRMZM2G018946_T02
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091533|gb|DV519907.1|DV519907
EST:     GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCA                         GAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
genomic: GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCAgtatgtatat ... gtatatgaagGAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
EST: gi|76915058|gb|DV165799.1|DV165799
EST:     GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCA                         GAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
genomic: GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCAgtatgtatat ... gtatatgaagGAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
EST: gi|71442030|gb|DR823080.1|DR823080
EST:     GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCA                         GAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
genomic: GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCAgtatgtatat ... gtatatgaagGAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
EST: gi|93013550|gb|EB639070.1|EB639070
EST:     GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCA                         GAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
genomic: GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCAgtatgtatat ... gtatatgaagGAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
EST: gi|71435524|gb|DR816574.1|DR816574
EST:     GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCA                         GAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
genomic: GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCAgtatgtatat ... gtatatgaagGAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
EST: gi|91876766|gb|EB406723.1|EB406723
EST:     GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCA                         GAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
genomic: GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCAgtatgtatat ... gtatatgaagGAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
EST: gi|78088916|gb|DV517309.1|DV517309
EST:     GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCA                         GAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
genomic: GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCAgtatgtatat ... gtatatgaagGAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
EST: gi|31558428|gb|CD527640.1|CD527640
EST:     GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCA                         GAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
genomic: GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCAgtatgtatat ... gtatatgaagGAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
EST: gi|71419272|gb|DR804704.1|DR804704
EST:     GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCA                         GAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
genomic: GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCAgtatgtatat ... gtatatgaagGAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
EST: gi|71446837|gb|DR827887.1|DR827887
EST:     GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCA                         GAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA
genomic: GATCGCTGAAGATATTGATGCTAAGGAAGTGGCTTTCGTTCAgtatgtatat ... gtatatgaagGAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcgaagctgatatgatataattgtcatttaactggtttgcttgtgtatatgaagGAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG
                          atttaac  putative branch site (score: 3)
          atatgatataattgtc  TA-rich tract