1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cattgagaaaatgcactatatttgcattttgggttactgtatctattttgctatcttcatttgttgctttacgttactcattatctgcatatggatatagGTGGCAGTGGGTGATGTTATATACATCGAAGCAAATAGTGGAGCAGTGAAAAGAGTTGGTAGATGTGATTCTTTTGCTACAGAATACGATCTTGAAGCTG
species | Zea mays |
transcript | GRMZM2G018697_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCAAAGAAAAG GTGGCAGTGGGTGATGTTATATACATCGAAGCAAATAGTGGAGCAGTGAAAEST: gi|93284661|gb|EB676925.1|EB676925
genomic: TCAAGGAAAAGgtaactgcct ... atggatatagGTGGCAGTGGGTGATGTTATATACATCGAAGCAAATAGTGGAGCAGTGAAA
EST: AGCAACTGAAGTTAGATTCTTCAATTTATGATGCTCTGATCAAGGAAAAG GTGGCAGTGGGTGATGTTATATACATCGAAGCAAATAGTGGAGCAGTGAAAEST: gi|9733421|gb|BE512278.1|BE512278
genomic: AGCAACTGAAGTTAGATTCTTCAATTTATGATGCTCTGATCAAGGAAAAGgtaactgcct ... atggatatagGTGGCAGTGGGTGATGTTATATACATCGAAGCAAATAGTGGAGCAGTGAAA
EST: AGCAACTGAAGTTAGATTCTTCAATTTATGATGCTCTGATCAAGGAAAAG GTGGCAGTGGGTGATGTTATATACATTGAAGCAAATAGTGGAGCAGTGAAEST: gi|211207933|gb|FK975839.1|FK975839
genomic: AGCAACTGAAGTTAGATTCTTCAATTTATGATGCTCTGATCAAGGAAAAGgtaactgcct ... atggatatagGTGGCAGTGGGTGATGTTATATACATCGAAGCAAATAGTGGAGCAGTGAA
EST: AGCAACTGAAGTTAGATTCTTCAATTTATGATGCTCTGATCAAGGAAAAG GTGGCAGTGGGTGATGTTATATACATTGAAGCAAATAGTGGAGCAGTGAAAEST: gi|213174323|gb|FM191608.1|FM191608
genomic: AGCAACTGAAGTTAGATTCTTCAATTTATGATGCTCTGATCAAGGAAAAGgtaactgcct ... atggatatagGTGGCAGTGGGTGATGTTATATACATCGAAGCAAATAGTGGAGCAGTGAAA
EST: AGCAACTGAAGTTAGATTCTTCAATTTATGATGCTCTGATCAAGGAAAAG GTGGCAGTGGGTGATGTTATATACATTGAAGCAAATAGTGGAGCAGTGAAA
genomic: AGCAACTGAAGTTAGATTCTTCAATTTATGATGCTCTGATCAAGGAAAAGgtaactgcct ... atggatatagGTGGCAGTGGGTGATGTTATATACATCGAAGCAAATAGTGGAGCAGTGAAA
ttttgctatcttcatttgttgctttacgttactcattatctgcatatggatatagGTGGCAGTGGGTGATGTTATATACATCGAAGCAAATAGTGGAGCAGTGAAAAGAGTTGGTAGATGTGATTCTTTTGCTACAGAATACGATCTTGAAGCTG
ttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattgagaaaatgcactatatttgcattttgggttactgtatctattttgctatcttcatttgttgctttacgttactcattatctgcatatggatatagGTGGCAGTGGGTGATGTTATATACATCGAAGCAAATAGTGGAGCAGTGAAAAGAGTTGGTAGATGTGATTCTTTTGCTACAGAATACGATCTTGAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - -aatgcac
- - - - - - - - - - -ttgcatt
- - - - - - - - - - - - - - - - - - ctgtatc
- - - - - - - - - - - - - - - - - - - - - - -ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atctgca