1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgattcctttccggcgttcttttttcccccattttctatgcattgcttagaagtgtaattacattttcacctactaataccctcgtttttcttgcagCTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGTTTATACTGTCTCCTGGTTTTCTCTCTCGAG
species | Zea mays |
transcript | GRMZM2G018678_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATATGAAGCA CTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGTEST: gi|74236095|gb|DT644009.1|DT644009
genomic: AGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATATGAAGCAgtatgattcc ... tttcttgcagCTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGT
EST: AGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATATGAAGCA CTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGTEST: gi|166678617|gb|EG279775.1|EG279775
genomic: AGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATATGAAGCAgtatgattcc ... tttcttgcagCTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGT
EST: TGAATCTTTTGAAATATGAAGCA CTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGTEST: gi|91871072|gb|EB401227.1|EB401227
genomic: TGAATCTTTTGAAATATGAAGCAgtatgattcc ... tttcttgcagCTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGT
EST: AGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATATGAAGCA CTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGTEST: gi|78075064|gb|DV503498.1|DV503498
genomic: AGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATATGAAGCAgtatgattcc ... tttcttgcagCTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGT
EST: AGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATATGAAGCA CTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGT
genomic: AGAATGAGAGAGACAAAAGGAAGGAGCTGAATCTTTTGAAATATGAAGCAgtatgattcc ... tttcttgcagCTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGT
ttgcttagaagtgtaattacattttcacctactaataccctcgtttttcttgcagCTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGTTTATACTGTCTCCTGGTTTTCTCTCTCGAG
tactaat putative branch site (score: 22)
taccctcgtttttctt CT-rich tract
tgtaattacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgattcctttccggcgttcttttttcccccattttctatgcattgcttagaagtgtaattacattttcacctactaataccctcgtttttcttgcagCTCAAGGATGAATTGCTGCTCTTGACCACAGGGATTGGAGCAGCATGTAGTTTATACTGTCTCCTGGTTTTCTCTCTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG