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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgagaatgtcttctttttaatataatgccctggggttgtcttaccccccgtagatcgagagagttgtaactgaccattgacttgttcttttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCAGATACATTGAAG

Basic information

species Zea mays
transcript GRMZM2G017941_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017941_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g03060.1 (Oryza sativa), 3'ss of exon 4
--gtgagaatgtcttctttttaatataatgc-cctggggttgtcttaccccccgtagatcgagagagttgtaactgaccattgacttgttcttttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCAGATACATTGAAG
  || | |||   | ||   | |  ||||     |   | ||   |  |     |  |  |    ||||| |||||||   | |||| || ||  |    |||||||||||||||||||| || ||||| ||||||| |||| || |||||| ||| |   |||||
atgtcaaaattattgctagatcaagtaatttatattatgatgctgtttcaatttttcaatgcttcagttgaaactgactgataacttattgttcctg---tagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG

upper sequence: GRMZM2G017941_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g03380.1 (Oryza sativa), 3'ss of exon 4
---gtgagaatgtc-ttctttttaata--taatgccctggggttgtcttaccccccgtagatcgagagagttgtaactgaccattgacttgttcttttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCAGATACATTGAAG
   || | | | |   |      | ||  | |||   ||  ||||| | |        |    | |  ||||| |||||||   | |||| || ||  |    ||||||||||| |||||||| || ||||||||||||| |||| |  |||||| ||| ||  |||||
tatgtcaaattattgctagaccaagtaattcatgttatgatgttgtttcaatttttcaa---tgcgtcagttgaaactgactgataacttattgttcctg---tagCTACAATCGTCAGACATTTCTAAAGATAAGCAAGCTGATTCTACTTTAGTAGACACGCTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211169637|gb|FL169510.1|FL169510
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|149084465|gb|EE173923.2|EE173923
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211171318|gb|FL169524.1|FL169524
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211169635|gb|FL169508.1|FL169508
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|149108720|gb|EE292928.2|EE292928
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCCGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211172991|gb|FL169534.1|FL169534
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATC
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATC
EST: gi|71329488|gb|DR801466.1|DR801466
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211169629|gb|FL169502.1|FL169502
EST:     TGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: TGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211171321|gb|FL169527.1|FL169527
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211174667|gb|FL169548.1|FL169548
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211171319|gb|FL169525.1|FL169525
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211169640|gb|FL169513.1|FL169513
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGC
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGC
EST: gi|211171310|gb|FL169516.1|FL169516
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|149013784|gb|EE043248.2|EE043248
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211171315|gb|FL169521.1|FL169521
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|91877946|gb|EB407903.1|EB407903
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211171316|gb|FL169522.1|FL169522
EST:     AGGATACT-AGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|31358873|gb|CD443230.1|CD443230
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|93281025|gb|EB673289.1|EB673289
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211171322|gb|FL169528.1|FL169528
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|78106618|gb|DV525036.1|DV525036
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211169633|gb|FL169506.1|FL169506
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTT
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTT
EST: gi|101399852|gb|EB821772.1|EB821772
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211172995|gb|FL169538.1|FL169538
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211172994|gb|FL169537.1|FL169537
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAMAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211172988|gb|FL169531.1|FL169531
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211169634|gb|FL169507.1|FL169507
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211172990|gb|FL169533.1|FL169533
EST:     TGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: TGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|67024634|gb|CO453383.1|CO453383
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211169632|gb|FL169505.1|FL169505
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211171320|gb|FL169526.1|FL169526
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211169641|gb|FL169514.1|FL169514
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211174666|gb|FL169547.1|FL169547
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCACGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211171323|gb|FL169529.1|FL169529
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211171311|gb|FL169517.1|FL169517
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|149072392|gb|EE160666.2|EE160666
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
EST: gi|211172996|gb|FL169539.1|FL169539
EST:     AGGATACT-AGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCCAGTTGATCCAG
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAG
EST: gi|148982778|gb|EE028604.2|EE028604
EST:     AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAG                         CTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA
genomic: AGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 153

TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCAGATACATTGAAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 273

TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCAGATACATTGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 218

TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCAGATACATTGAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 302

TGTTCAAGGGAGGATACTGAGAAGCATGTTGATGTTGCCATTGTTTTTATTGGCTCAAAGgtatactcat ... ttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCAGATACATTGAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccccgtagatcgagagagttgtaactgaccattgacttgttcttttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCAGATACATTGAAG
                                    cttgttcttttttact  CT-rich tract
                                        ttcttttttactta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagaatgtcttctttttaatataatgccctggggttgtcttaccccccgtagatcgagagagttgtaactgaccattgacttgttcttttttacttagCTACAATCATCAGACATATCGAAAGATAAGCAAGTTGATCCAGCTTTAGCAGATACATTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - tgccctg