1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catccatatctatattttagttatcagttggagaactttggctgttctgctttccttcttttttttgtgatgtattaacaataaatgtttttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAAAAGTGGAAAATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGG
species | Zea mays |
transcript | GRMZM2G017853_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|91871463|gb|EB401433.1|EB401433
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|211291636|gb|FL460652.1|FL460652
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: AGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTCCTAEST: gi|71437097|gb|DR818147.1|DR818147
genomic: AGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|76927174|gb|DV171165.1|DV171165
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|71310881|gb|DR791743.1|DR791743
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|78089273|gb|DV517647.1|DV517647
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|78082079|gb|DV510491.1|DV510491
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|71310883|gb|DR791744.1|DR791744
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|74233404|gb|DT641318.1|DT641318
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|148975423|gb|EE025724.2|EE025724
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|78085442|gb|DV513835.1|DV513835
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|50336042|gb|CO531168.1|CO531168
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|101382998|gb|EB813552.1|EB813552
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|78089274|gb|DV517648.1|DV517648
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|76927172|gb|DV171164.1|DV171164
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTTTAEST: gi|71764490|gb|DR962427.1|DR962427
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAEST: gi|89251154|gb|DY622940.1|DY622940
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
EST: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG GATTGTCTGTCAGTGCAAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
genomic: CATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAGgtactagaga ... ttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTA
tctgctttccttcttttttttgtgatgtattaacaataaatgtttttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAAAAGTGGAAAATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGG
tattaac putative branch site (score: 1)
tgttttttttt putative PPT
ttttttttgtgatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catccatatctatattttagttatcagttggagaactttggctgttctgctttccttcttttttttgtgatgtattaacaataaatgtttttttttgcagGATTGTCTGTCAGTGCCAATTGGCAGGAGCCCTCGTACTGATATTCTTCTAAAAGTGGAAAATGTTGTTCTTGAGGCAGGAGGCTGTGTTCTCAGGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA