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...gtaatgctcaagaacacaccaggatgattggcatggaagatatcattttgaccttttttctcttactatttttttatataaactaacttcttttctgcagAGCATGCGCAGGATGTCACAGAGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGT
species | Zea mays |
transcript | GRMZM2G017845_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGGAAATGCATATCACCCATTACCATTTATGTTCTCATCTGGGAT-CAG AGCATGCGCAGGATGTCACAGAGAGATTGGTCACGGGCGTTEST: gi|211158045|gb|FL160650.1|FL160650
genomic: GTGGAAATGCATATCACCCATTACCATTTATGTTCTCATCTGG-ATTCAGgttcatttca ... ttttctgcagAGCATGCGCAGGATGTCACAGAGAGATTGGTCACGGGCGTT
EST: GGTGGAAATGCATATCACCCATTACCATTTATGTTCTCATCTGGATTCAG AGCATGCGCAGGATGTCACAGAGAGATTGGTCACGGGCGTTTTCTCAGTTGEST: gi|211158047|gb|FL160652.1|FL160652
genomic: GGTGGAAATGCATATCACCCATTACCATTTATGTTCTCATCTGGATTCAGgttcatttca ... ttttctgcagAGCATGCGCAGGATGTCACAGAGAGATTGGTCACGGGCGTTTTCTCAGTTG
EST: GGTGGAAATGCATATCACCCATTACCATTTATGTTCTCATCTGGATTCAG AGCATGCGCAGGATGTCACAGAGAGATTGGTCACGGGCGTTTTCTCAGTTG
genomic: GGTGGAAATGCATATCACCCATTACCATTTATGTTCTCATCTGGATTCAGgttcatttca ... ttttctgcagAGCATGCGCAGGATGTCACAGAGAGATTGGTCACGGGCGTTTTCTCAGTTG
ttttgaccttttttctcttactatttttttatataaactaacttcttttctgcagAGCATGCGCAGGATGTCACAGAGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGT
aactaac putative branch site (score: 68)
ctaacttcttttct CT-rich tract
ttttttctcttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgctcaagaacacaccaggatgattggcatggaagatatcattttgaccttttttctcttactatttttttatataaactaacttcttttctgcagAGCATGCGCAGGATGTCACAGAGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- aatgctc
- - - - -aagaaca
- - - - - - - - caccagg
- - - - - - - - - - - -atgattg
- - - - - - - - - - - - - - - gcatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa