1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aactacaccgtaacgcttcatcacaccaagatgcattgtatttgtgtaggatgcagtttcattgactttgacatgtgctttcggacattttctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGCTCATGTTGAAGGTGGACCATATTTTGGTAACCTAAATCCTGTAGCCATC
species | Zea mays |
transcript | GRMZM2G017634_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTCTCCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT GTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGCEST: gi|24769296|gb|CA404425.1|CA404425
genomic: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgata ... tctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
EST: AGTCTCCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT GTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGCEST: gi|33467010|gb|CF244059.1|CF244059
genomic: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgata ... tctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
EST: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT GTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGCEST: gi|31355617|gb|CD439974.1|CD439974
genomic: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgata ... tctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
EST: AGTCTCCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT GTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
genomic: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgata ... tctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
gtaggatgcagtttcattgactttgacatgtgctttcggacattttctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGCTCATGTTGAAGGTGGACCATATTTTGGTAACCTAAATCCTGTAGCCATC
cattttcttt CT-rich tract
attttctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactacaccgtaacgcttcatcacaccaagatgcattgtatttgtgtaggatgcagtttcattgactttgacatgtgctttcggacattttctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGCTCATGTTGAAGGTGGACCATATTTTGGTAACCTAAATCCTGTAGCCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA