1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aactacaccgtaacgcttcatcacaccaagatgcattgtatttgtgtaggatgcagtttcattgactttgacatgtgctttcggacattttctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGCTCATGTTGAAG
species | Zea mays |
transcript | GRMZM2G017634_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT GTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGCEST: gi|37390609|gb|CF632538.1|CF632538
genomic: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgata ... tctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
EST: AGTCTCCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT GTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGTC
genomic: AGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGATgtaagtgata ... tctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGC
gtaggatgcagtttcattgactttgacatgtgctttcggacattttctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGCTCATGTTGAAG
cattttcttt CT-rich tract
attttctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactacaccgtaacgcttcatcacaccaagatgcattgtatttgtgtaggatgcagtttcattgactttgacatgtgctttcggacattttctttaacagGTGGAAAGTGGACTAAGAAGACCGTTGAACTCCTAGGATAAAACAGCGGGCTCATGTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG