1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cactctttaagtcatttatcaatgctgcaactcttgtcaatgttgcaacaagtacaaggctgtagtatgttaatttacaaaaagaatcctctgtttgcagGGTGATAAACAAAGTGGTAGTAATGACAGTGGTTCAACATCCGCGGGCCAGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT
species | Zea mays |
transcript | GRMZM2G017634_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTACTCGTCACTGTTCGAGGATGTTCGAAACAATGCATGCAATCATCAG GGTGATAAACAAAGTGGTAGTAATGACAGTGGTTCAACATCCGCGGGCCAGEST: gi|37390609|gb|CF632538.1|CF632538
genomic: ACTACTCGTCACTGTTCGAGGATGTTCGAAACAATGCATGCAATCATCAGgtattacctt ... ctgtttgcagGGTGATAAACAAAGTGGTAGTAATGACAGTGGTTCAACATCCGCGGGCCAG
EST: GTCACTATTCGAGGATGTTCGAAACAATGCATGCAATCATCAG GGTGATAAACAAAGTGGTAGTAATGACAGTGGTTCAACATCCGCGGGCCAG
genomic: GTCACTGTTCGAGGATGTTCGAAACAATGCATGCAATCATCAGgtattacctt ... ctgtttgcagGGTGATAAACAAAGTGGTAGTAATGACAGTGGTTCAACATCCGCGGGCCAG
caacaagtacaaggctgtagtatgttaatttacaaaaagaatcctctgtttgcagGGTGATAAACAAAGTGGTAGTAATGACAGTGGTTCAACATCCGCGGGCCAGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT
tgttaat putative branch site (score: 31)
tcctctgttt putative PPT
tatgttaatttacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactctttaagtcatttatcaatgctgcaactcttgtcaatgttgcaacaagtacaaggctgtagtatgttaatttacaaaaagaatcctctgtttgcagGGTGATAAACAAAGTGGTAGTAATGACAGTGGTTCAACATCCGCGGGCCAGTCACCACGACTTAAATCTTTTGCTTGTAGATCTCTTCTGGCTAATGAT
- - - - - - - - - - -atgctgc
- - - - - - - - - - - - - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa