1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactgatatattttattatgatacatcagcatttctttattctttatatgatgcacttaaatttcatctttgagttaacatagctgtgtcctggatgtattgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATCCTTCCCTTGGTGGAATGGAATAT
species | Zea mays |
transcript | GRMZM2G016184_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCEST: gi|211179443|gb|FL364371.1|FL364371
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATC
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|60400317|gb|DN233124.1|DN233124
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: CATTCCGTTATTTGGATAATATCCACCTTTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|211286255|gb|FL063748.1|FL063748
genomic: CATTCCGTTA-TTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|44681921|gb|CK786969.1|CK786969
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCAGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGCATEST: gi|76293603|gb|DV033171.1|DV033171
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|148947020|gb|EC892317.2|EC892317
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|76286797|gb|DV026365.1|DV026365
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|211200884|gb|FL351309.1|FL351309
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTEST: gi|148947019|gb|EC892316.2|EC892316
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACT
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|50322746|gb|CO517872.1|CO517872
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|50338098|gb|CO533224.1|CO533224
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|148953653|gb|EC899012.2|EC899012
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|67017667|gb|CO446416.1|CO446416
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|76280960|gb|DV020528.1|DV020528
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: AGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
cttaaatttcatctttgagttaacatagctgtgtcctggatgtattgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATCCTTCCCTTGGTGGAATGGAATAT
agttaac putative branch site (score: 3)
ttaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgatatattttattatgatacatcagcatttctttattctttatatgatgcacttaaatttcatctttgagttaacatagctgtgtcctggatgtattgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATCCTTCCCTTGGTGGAATGGAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA