1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactgatatattttattatgatacatcagcatttctttattctttatatgatgcacttaaatttcatctttgagttaacatagctgtgtcctggatgtattgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATCCTTCCCTTGGTGGAATGGAATAT
species | Zea mays |
transcript | GRMZM2G016184_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTCCGTTATTTGGATAATATCCACCTTTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|211286255|gb|FL063748.1|FL063748
genomic: CATTCCGTTA-TTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: GGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATEST: gi|211154538|gb|FL360790.1|FL360790
genomic: GGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
EST: GGGGACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGG GTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
genomic: GGG-ACCTATTACATTCCGTTATTCGATAATATCCACCTCTGCGTTGGGGgtactgatat ... tgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTAT
cttaaatttcatctttgagttaacatagctgtgtcctggatgtattgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATCCTTCCCTTGGTGGAATGGAATAT
agttaac putative branch site (score: 199)
ttaacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgatatattttattatgatacatcagcatttctttattctttatatgatgcacttaaatttcatctttgagttaacatagctgtgtcctggatgtattgcttgatagGTTTCTGTCGGCTACTTCATCACTGATCTTGCAATGATCTTCTGGCTGTATCCTTCCCTTGGTGGAATGGAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA