1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggttcttatccttttatttcatttcattgtgatttgttttatctcatctttctaaaaagttcgaactacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAG
species | Zea mays |
transcript | GRMZM2G015324_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATT TCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGEST: gi|9953024|gb|BE639607.1|BE639607
genomic: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttctt ... tacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
EST: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATT TCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGEST: gi|12968888|gb|BG265729.1|BG265729
genomic: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttctt ... tacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
EST: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATT TCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGEST: gi|6102042|gb|AW126512.1|AW126512
genomic: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttctt ... tacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
EST: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATT TCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGEST: gi|67024253|gb|CO453002.1|CO453002
genomic: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttctt ... tacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
EST: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATT TCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGEST: gi|87155086|gb|DY399875.1|DY399875
genomic: AGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttctt ... tacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
EST: ATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATT TCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
genomic: ATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggttctt ... tacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGG
tttcattgtgatttgttttatctcatctttctaaaaagttcgaactacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAG
ttctaaa putative branch site (score: 2)
atttgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttcttatccttttatttcatttcattgtgatttgttttatctcatctttctaaaaagttcgaactacctgacagTCTCGTTCAAGCTATATGATATGGATAGCACAGGGTTTATTGAACGGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG