1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtactttatctgttcaatctgtttcatattgtgcttagacaatgcacgctaccttgttaattgtggtgattttacttcttttttttaacatgtggtgattttacttctgtagGAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAGGGTGATAAAACTCATGTATATACTCGGGTTGTTGGCACCTATGGTTATG
species | Zea mays |
transcript | GRMZM2G014596_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTG GAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAGEST: gi|166568997|gb|EG180584.1|EG180584
genomic: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTGgtactttatc ... acttctgtagGAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAG
EST: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTG GAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCEST: gi|71445329|gb|DR826379.1|DR826379
genomic: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTGgtactttatc ... acttctgtagGAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGC
EST: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTG GAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAGEST: gi|71772898|gb|DR970821.1|DR970821
genomic: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTGgtactttatc ... acttctgtagGAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAG
EST: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTG GAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAGEST: gi|71773272|gb|DR971181.1|DR971181
genomic: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTGgtactttatc ... acttctgtagGAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAG
EST: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTG GAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAGEST: gi|211399376|gb|FL450762.1|FL450762
genomic: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTGgtactttatc ... acttctgtagGAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAG
EST: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTG GAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAGEST: gi|71426555|gb|DR807605.1|DR807605
genomic: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTGgtactttatc ... acttctgtagGAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAG
EST: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTG GAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAGEST: gi|101392588|gb|EB818224.1|EB818224
genomic: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTGgtactttatc ... acttctgtagGAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAG
EST: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTG GAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAG
genomic: AACCTGTTATTTACAGGGATTTTAAGACATCGAATGTTCTTCTTGATGTGgtactttatc ... acttctgtagGAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAG
taattgtggtgattttacttcttttttttaacatgtggtgattttacttctgtagGAGTACAACGCAAAACTATCCGATTTCAGTTTAGCAAAAGCTGGTCCTCAGGGTGATAAAACTCATGTATATACTCGGGTTGTTGGCACCTATGGTTATG
ttttaac putative branch site (score: 25)
ttttacttct putative PPT
attttacttctttttt TA-rich tract