Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatatctaaaacatagaaccccacagttctaaagtcgtatgacctatattctctatttcatacataattacttactaattccttggttattttcaatagGATGGGAGAGTGTCGGATGCTTCTTCATATACTATTTCTTGGTCCATCAAATCTGCTTGACTCAAATGCAAGTTTTGCTCAAATGTGGCAAAAATAATTG

Basic information

species Zea mays
transcript GRMZM2G014367_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934225|gb|CF039037.1|CF039037
EST:     CTTGTGATTGTGATTAGTTACTTCAAAGCGTTTTTTGGTCTTAATGCATG                         GATGGGAGAGTGTCGGATGCTTCTTCATATACTATTTCTTGGTCCATCAAA
genomic: CTTGTGATTGTGATTAGTTACTTCAAAGCGTTTTTTGGTCTTAATGCATGgtaagtttat ... ttttcaatagGATGGGAGAGTGTCGGATGCTTCTTCATATACTATTTCTTGGTCCATCAAA
EST: gi|12970345|gb|BG266937.1|BG266937
EST:     TTGTGATTGTGATTAGTTACTTCAAAGCGTTTTTTGGTCTTAATGCATG                         GATGGGAGAGTGTCGGATGCTTCTTCATATACTATTTCTTGGTCCATCAAA
genomic: TTGTGATTGTGATTAGTTACTTCAAAGCGTTTTTTGGTCTTAATGCATGgtaagtttat ... ttttcaatagGATGGGAGAGTGTCGGATGCTTCTTCATATACTATTTCTTGGTCCATCAAA
EST: gi|211038615|gb|FL457701.1|FL457701
EST:     CTTGTGATTGTGATTAGTTACTTCAAAGCGTTTTTTGGTCTTAATGCATG                         GATGGGAGAGTGTCGGATGCTTCTTCATAWACTATTTCTTGGTCCATCAAA
genomic: CTTGTGATTGTGATTAGTTACTTCAAAGCGTTTTTTGGTCTTAATGCATGgtaagtttat ... ttttcaatagGATGGGAGAGTGTCGGATGCTTCTTCATATACTATTTCTTGGTCCATCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattctctatttcatacataattacttactaattccttggttattttcaatagGATGGGAGAGTGTCGGATGCTTCTTCATATACTATTTCTTGGTCCATCAAATCTGCTTGACTCAAATGCAAGTTTTGCTCAAATGTGGCAAAAATAATTG
                            tactaat  putative branch site (score: 1)
                                          ttattttc  putative PPT
         tatttcatacataatt  TA-rich tract