Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacttcacttcagtgactccatttcttataatgatccaacatcagagacagctcagccattctacatcttgcattactcatcatgagttaacgtgcataatgcagaaacttctgtccagtgtttgtatgtgttttaaatctagtttttagttctcatatgcatttgtgtgtgtatgtgcatgaatccagGTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCATATGCAGAGAACAGTGTGGGAGACCAGATCTACATTGTACGACAGCCTG

Basic information

species Zea mays
transcript GRMZM2G014193_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014193_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g17784.1 (Oryza sativa), 3'ss of exon 4
gtgacttcacttcagtgactccatttcttataatgatccaacatcagagacagctcagccattctacatcttgcattactcatcatgagttaacgtgcataatgcagaaacttctgtccagtgtttgtatgtgttttaaatctagtttttagttctcatatgcatttgtgtgtgtatgtgcatgaatccagGTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCATATGCAGAGAACAGTGTGGGAGACCAGATCTACATTGTACGACAGCCTG
                                                                            || |  | |||    ||  |   | ||      | || |||    ||||  | | | | ||      |||  |      |||    || ||||      | ||| | || | |||||  | ||||| |||||||| |||||||||||||||||||||||||| ||||||| |||  |||| ||||| || || ||||| || || || || || |
----------------------------------------------------------------------------tatttcttatggccaaatttagctgatatg---atttatgttatatgttaat-tatatattggga--agtactccaacttca----cagttgt-----cacgtgtacgagtgcagGTGGTTAATTCTACATATGCATTATGGACATGGCACCGTAACCAGGATGCATATGGAGAAGACAGCGTGGGGGATCAAATCTATATAGTTCGGCAACCGG

upper sequence: GRMZM2G014193_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA19G03220.1 (Glycine max), 3'ss of exon 6
gtgacttcacttcagtgactccatttcttataatgatccaacatcagagacagctcagccattctacatcttgcattactcatcatga-gttaacgtgcataatgcagaaacttctgtccagtgtttgtatgtgttttaaatctagtttttagttctcatatgcatttgtgtgtgtatgtgcatgaatccagGTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCATATGCAGAGAACAGTGTGGGAGACCAGATCTACATTGTACGACAGCCTG
                                                                                 || |    |||   || ||| |    || ||       || |  |||| |   || | ||||   || ||        ||   |||| |   |||   |   | | | |||||  |||||||||||||||| |||||||| |||||||| || || |||   ||   ||| ||    || || ||||| || |||||||| ||||| ||||
--------------------------------------------------------------------------------tattacattgtttttgttcatgaaatggatacagtccatcaattcttgtctagattattaatccttttctt--------taaaaatttat---tgt-cctattttattgcagGTTGTGAATTCAACATATGCATTATGGACTTGGCACCGAAATCAAGACAATTACAAAGAAAATGCAGTTGGTGACCAAATATACATTGTGCGACAACCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211230826|gb|FL445469.1|FL445469
EST:     CAGAATGGAGTGCATACAGAGAGAGCAGTTTTGGTCATGGGATTCTAGAG                         GTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCA
genomic: CAGAATGGAGTGCATACAGAGAGAGCAGTTTTGGTCATGGGATTCTAGAGgtgacttcac ... atgaatccagGTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCA
EST: gi|76017828|gb|DT944998.1|DT944998
EST:     CAGAATGGAGTGCATACAGAGAGAGCAGTTTTGGTCATGGGATTCTAGAG                         GTCCTGAATTCAACATATGCCTTATGGACAGGGCCCCGTAACCAGGACGCA
genomic: CAGAATGGAGTGCATACAGAGAGAGCAGTTTTGGTCATGGGATTCTAGAGgtgacttcac ... atgaatccagGTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCA
EST: gi|60354716|gb|DN221689.1|DN221689
EST:     CAGAATGGAGTGCATACAGAGAGAGCAGTTTTGGTCATGGGATTCTAGAG                         GTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCA
genomic: CAGAATGGAGTGCATACAGAGAGAGCAGTTTTGGTCATGGGATTCTAGAGgtgacttcac ... atgaatccagGTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCA
EST: gi|67022183|gb|CO450932.1|CO450932
EST:     CAGAATGGAGTGCATACAGAGAGAGCAGTTTTGGTCATGGGATTCTAGAG                         GTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCA
genomic: CAGAATGGAGTGCATACAGAGAGAGCAGTTTTGGTCATGGGATTCTAGAGgtgacttcac ... atgaatccagGTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCA
EST: gi|71318569|gb|DR796044.1|DR796044
EST:     CAGAATGGAGTGCATACAGAGAGAGCAGTTTTGGTCATGGGATTCTAGAG                         GTCCTGAATTCAACATATGCCTTATGGACATGGCCCCGTAACCAGGACGCA
genomic: CAGAATGGAGTGCATACAGAGAGAGCAGTTTTGGTCATGGGATTCTAGAGgtgacttcac ... atgaatccagGTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCA
EST: gi|78093470|gb|DV521844.1|DV521844
EST:     CAGAATGGAGTGCATACAGAGAGAGCAGTTTTGGTCATGGGATTCTAGAG                         GTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCA
genomic: CAGAATGGAGTGCATACAGAGAGAGCAGTTTTGGTCATGGGATTCTAGAGgtgacttcac ... atgaatccagGTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatctagtttttagttctcatatgcatttgtgtgtgtatgtgcatgaatccagGTCCTGAATTCAACATATGCCTTATGGACATGGCACCGTAACCAGGACGCATATGCAGAGAACAGTGTGGGAGACCAGATCTACATTGTACGACAGCCTG
      tagttttta  TA-rich tract