1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttcaaactatgccgactatttcaacgtctatggactaattacatcgcaagataacgagttagtatgctgtcctgtttccaatacgcagGTAGTTTCCTTTAACGGAGAGAACAAGGCCATTGCAGCGTACAAGAGCTTGATAAAGAAGGCCTACAGGACTGACGTTTTGGAAGGCCTGATCAACGGTT
species | Zea mays |
transcript | GRMZM2G014089_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGGAGATGCTGGGGACACCGTTGAACAGACCATCGGAGCTATAAGAACG GTAGTTTCCTTTAACGGAGAGAACAAGGCCATTGCAGCGT
genomic: ACGGAGATGCTGGGGACACCGTTGAACAGACCATCGGAGCTATAAGAACGgtgagttcaa ... caatacgcagGTAGTTTCCTTTAACGGAGAGAACAAGGCCATTGCAGCGT
actaattacatcgcaagataacgagttagtatgctgtcctgtttccaatacgcagGTAGTTTCCTTTAACGGAGAGAACAAGGCCATTGCAGCGTACAAGAGCTTGATAAAGAAGGCCTACAGGACTGACGTTTTGGAAGGCCTGATCAACGGTT
tcctgtttcc CT-rich tract
aagataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcaaactatgccgactatttcaacgtctatggactaattacatcgcaagataacgagttagtatgctgtcctgtttccaatacgcagGTAGTTTCCTTTAACGGAGAGAACAAGGCCATTGCAGCGTACAAGAGCTTGATAAAGAAGGCCTACAGGACTGACGTTTTGGAAGGCCTGATCAACGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG