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gttgactaggggcataactgctgatggttttcctctgatttttttttgcatctgtcatgtgttctgcccatctgctaattgtcgccactgttttgcagAAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAGGATGGTTTTGACAAAGATTCTATCAGCAAGAGGCTTGAGGAGATATATA
species | Zea mays |
transcript | GRMZM2G013890_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGAACGAGTTCAACTTTTGCAGGAAGAAGCTCGTCTTGTTCAACAACAG AAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAGEST: gi|8367142|gb|BE050087.1|BE050087
genomic: TCGAACGAGTTCAACTTTTGCAGGAAGAAGCTCGTCTTGTTCAACAACAGgttgactagg ... tgttttgcagAAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAG
EST: TCGAACGAGTTCAACTTTTGCAGGAAGAAGCTCGTCTTGTTCAACAACAG AAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAGEST: gi|60396671|gb|DN229539.1|DN229539
genomic: TCGAACGAGTTCAACTTTTGCAGGAAGAAGCTCGTCTTGTTCAACAACAGgttgactagg ... tgttttgcagAAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAG
EST: TCGAACGAGTTCAACTTTTGCAGGAAGAAGCTCGTCTTGTTCAACAACAG AAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAGEST: gi|211238346|gb|FL044424.1|FL044424
genomic: TCGAACGAGTTCAACTTTTGCAGGAAGAAGCTCGTCTTGTTCAACAACAGgttgactagg ... tgttttgcagAAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAG
EST: TCGAACGAGTTCAACTTTTGCAGGAAGAAGCTCGTCTTGTTCAACAACAG AAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCCGACAAGGGCAAGEST: gi|76914101|gb|DV165406.1|DV165406
genomic: TCGAACGAGTTCAACTTTTGCAGGAAGAAGCTCGTCTTGTTCAACAACAGgttgactagg ... tgttttgcagAAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAG
EST: TCGAACGAGTTCAACTTTTGCAGGAAGAAGCTCGTCTTGTTCAACAACAG AAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAGEST: gi|60351172|gb|DN218145.1|DN218145
genomic: TCGAACGAGTTCAACTTTTGCAGGAAGAAGCTCGTCTTGTTCAACAACAGgttgactagg ... tgttttgcagAAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAG
EST: TCGAACGAGTTCAACTTTTGCAGGAAGAAGCTCGTCTTGTTCAACAACAG AAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAG
genomic: TCGAACGAGTTCAACTTTTGCAGGAAGAAGCTCGTCTTGTTCAACAACAGgttgactagg ... tgttttgcagAAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAG
ttttgcatctgtcatgtgttctgcccatctgctaattgtcgccactgttttgcagAAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAGGATGGTTTTGACAAAGATTCTATCAGCAAGAGGCTTGAGGAGATATATA
tgctaat putative branch site (score: 66)
ctgtttt putative PPT
taattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgactaggggcataactgctgatggttttcctctgatttttttttgcatctgtcatgtgttctgcccatctgctaattgtcgccactgttttgcagAAAGATTTAGAGATTGAGGCTGAGTTTGGGCAGAGCTCTGACAAGGGCAAGGATGGTTTTGACAAAGATTCTATCAGCAAGAGGCTTGAGGAGATATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT