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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaaccctaaatactacggtattcataaattccatagttttatcttgaaactccaaaaatactgagctaccaaaacaggccctaacaagctatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTTGAGCAG

Basic information

species Zea mays
transcript GRMZM2G013750_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013750_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g63430.2 (Oryza sativa), 3'ss of exon 4
-tgaaccctaaatactacggtattcataaattccatagttttatct--tgaaactccaaaaatactgagct---accaaaacaggccctaacaagctatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTTGAGCAG
 | |   | |  | | ||  || ||||      || ||||  ||||  |  |||  | | | |  ||   |   | | | | |    |||||||| |  |  |||||| |||||||||||||||||||||||||| || || ||||| |||||||| ||||||
gtaagttcaagctgc-actataatcatgg--cacacagttacatctactataaccaccatagtgttgtcttcgcatctacataatgtctaacaagttcatcctcagGTTGAAACATTTGGCTCCATGGCAAAGACAGAAAAGATTGCATTCATTCTAGAGCAG

upper sequence: GRMZM2G013750_T04 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G15340.1 (Glycine max), 3'ss of exon 4
-tgaaccctaa-atactacg-gtattcataaattccatagttttatcttgaaactccaaaaatactgagctaccaaaacaggccct-aacaagctattt-atcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTTGAGCAG
 | |     ||  |   ||  || ||  |   ||  ||| |||  | ||   |      || || | ||    ||    |       ||   |  || | | ||||| |||||||| ||  ||||||| ||||| ||||||||||| ||||||||||| || 
gtcagtgtgaatgtgtcacatgttttgttggcttgtatactttgttttttggatgt---aactaattagtattcagtttacttatggaatgggtaatctgaacagGTGGAAACATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAA

upper sequence: GRMZM2G013750_T04 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA05G32030.2 (Glycine max), 3'ss of exon 4
-tgaaccctaa-atactacg-gtattcataaattccatagttttatcttgaaactccaaaaatactgagctaccaaaacaggccctaacaagcta--tttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTTGAGCAG
 | |     ||  |    |  || ||  |   ||| ||| |||  | ||   |||    || |  | ||    ||    |       |   | ||   ||| ||||| ||||| |||||  ||||||| ||||| ||||||||||| |||||||| || || 
gtcagtgtgaacgtgtctcatgttttgttggcttctatactttgttttttggactt---aactgataagtattcagtttacttatggaatgggtaatcttaacagGTGGAAACTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAA

upper sequence: GRMZM2G013750_T04 (Zea mays), 3'ss of exon 4
lower sequence: AT5G64760.2 (Arabidopsis thaliana), 3'ss of exon 4
-tgaaccctaaatactacggtattcataaattccatagtt-ttatcttgaaactccaaaaatactgagctaccaaaacaggccctaacaagctatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTTGAGCAG
 | | |  |   | ||    | | |  || || | | |   |  | ||  |  |     |    | | | |     |  |    | |  |   | |||| |||| || ||||||||  | |||||||| || ||||||||||||||||||||||| || 
gtaagcttttcttcctctactttcc--aactttcgtggaaatcgttttttatttattttatagtttatcaatgtgcattgattgtgatta-tgaattat-agGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAA

upper sequence: GRMZM2G013750_T04 (Zea mays), 3'ss of exon 4
lower sequence: PP1S58_256V6.1 (Physcomitrella patens), 3'ss of exon 4
-------------------------------------------------------------------------tgaaccctaaatactacggtattcataaattccatagttttatct-tgaaactccaaaaatactgagct--accaaaacaggccctaacaagctatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTTGAGCAG
                                                                         |       || |  || |   | | | ||  |  ||| ||  |||  | | ||    || |  ||  |   | | ||  | |    || |  | | | |  |||| || || || ||  | ||||||||||| |||||||||||||||||||| ||||||
gtatgatccctaatcttccactttttttgaaacttatatttaggagcaagaaatttcgtttttgatctcgaagtcggtgtgaagtggtatgcggtgcctgaac-cagtagattggtctacgcagctttctaattgatgcacctgatctaataatgttgcaatactccaatga--agGTGGAGACCTTCGGTGCTATGGCAAAGACAGAGAAAATTGCTTTCATTCTAGAGCAG

upper sequence: GRMZM2G013750_T04 (Zea mays), 3'ss of exon 4
lower sequence: PP1S257_89V6.2 (Physcomitrella patens), 3'ss of exon 4
------------------------tgaacc-ctaaatactacggtattcataaattccatagttt------tatcttgaaactccaaaaatac------tgagctaccaaaac---aggccctaacaagc---------tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTTGAGCAG
                        ||| |   | ||   |  |  |    |||  | ||| || |       || |||   || | | | | |      ||   ||   ||       ||||| |   |          |  |  |||||| ||||| |||||  |||||||||| || ||||| ||||||||||||||||| || 
gtatgtgatattgcttcgtgctgttgatcaattcaacggttagtaacatgtaatgttcatggtgtggaagacattttggtgctactagagtgcacagggtggtgtattgaatattggagccctgattcgtatcggcgtttggtcttcagGTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAGATTGCTTTCATTCTTGAACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352441|gb|DN219414.1|DN219414
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|33095283|gb|CF055277.1|CF055277
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAAAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|60341151|gb|DN208124.1|DN208124
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|13316089|gb|BG410536.1|BG410536
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|67017748|gb|CO446497.1|CO446497
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|211430132|gb|FL338157.1|FL338157
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|211053473|gb|FL477603.1|FL477603
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|149074396|gb|EE162784.2|EE162784
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|18169982|gb|BM339822.1|BM339822
EST:     AGGAGCAGGGAAAGATTAAAAAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|31909275|gb|CD650837.1|CD650837
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|32847815|gb|CD987496.1|CD987496
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|120480672|gb|EH210948.1|EH210948
EST:     AGGAGCAGGGAAAGATTGACGAGGCTACTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|40337465|gb|CK371535.1|CK371535
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|149084023|gb|EE173418.2|EE173418
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|149078169|gb|EE166920.2|EE166920
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|211448768|gb|FL325252.1|FL325252
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|18175563|gb|BM350832.1|BM350832
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|4753426|gb|AI657336.1|AI657336
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATT
EST: gi|17930979|gb|BM267939.1|BM267939
EST:     AGGAGCAGGGAAAGATTGAAGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|32824870|gb|CD964592.1|CD964592
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|60349290|gb|DN216263.1|DN216263
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|18166766|gb|BM336605.1|BM336605
EST:     AGGAGCAGGGAAAGATTGAAAAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|148945292|gb|EC890506.2|EC890506
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|13316088|gb|BG410535.1|BG410535
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|148945727|gb|EC891006.2|EC891006
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|166683191|gb|EG275903.1|EG275903
EST:     GGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTC
genomic: GGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTC
EST: gi|211535625|gb|FL478806.1|FL478806
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGCCTCCATGGCAAAGACGGAGAAAATTCCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|211088675|gb|FL328946.1|FL328946
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|20803197|gb|BQ294247.1|BQ294247
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGA
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGA
EST: gi|148974705|gb|EE025514.2|EE025514
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCCTGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|67013990|gb|CO442739.1|CO442739
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|60358562|gb|DN225535.1|DN225535
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|9952312|gb|BE638895.1|BE638895
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
EST: gi|211040418|gb|FL321548.1|FL321548
EST:     AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT                         GTCGAAACATTTTGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaactccaaaaatactgagctaccaaaacaggccctaacaagctatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTTGAGCAG
                                  ccctaac  putative branch site (score: 2)
         aaaaatact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgaaccctaaatactacggtattcataaattccatagttttatcttgaaactccaaaaatactgagctaccaaaacaggccctaacaagctatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTTGAGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggccc