1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgaaccctaaatactacggtattcataaattccatagttttatcttgaaactccaaaaatactgagctaccaaaacaggccctaacaagctatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
species | Zea mays |
transcript | GRMZM2G013750_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT GTCGAAACATTTGGCTCCATGGCAAAGACGGACEST: gi|13316089|gb|BG410536.1|BG410536
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
EST: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT GTCGAAACATTTGGCTCCATGGCAAAGACGGAGEST: gi|32846815|gb|CD986496.1|CD986496
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
EST: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT GTCGAAACATTTGGCTCCATGGCAAAGACGGACEST: gi|31909275|gb|CD650837.1|CD650837
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
EST: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT GTCGAAACATTTGGCTCCATGGCAAAGACGGAGEST: gi|13316088|gb|BG410535.1|BG410535
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
EST: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT GTCGAAACATTTGGCTCCATGGCAAAGACGGAGEST: gi|4753426|gb|AI657336.1|AI657336
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
EST: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT GTCGAAACATTTGGCTCCATGGCAAAGACGGAGEST: gi|9952312|gb|BE638895.1|BE638895
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
EST: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT GTCGAAACATTTGGCTCCATGGCAAAGACGGAGEST: gi|148974705|gb|EE025514.2|EE025514
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
EST: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT GTCGAAACATTTGGCTCCCTGGCAAAGACGGAGEST: gi|211448768|gb|FL325252.1|FL325252
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
EST: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT GTCGAAACATTTGGCTCCATGGCAAAGACGGAGEST: gi|20803197|gb|BQ294247.1|BQ294247
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
EST: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT GTCGAAACATTTGGCTCCATGGCAAAGAEST: gi|32943967|gb|CF048786.1|CF048786
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGA
EST: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCT GTCGAAACATTTGGCTCCATGGCAAAGACGGAC
genomic: AGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAGTTGCTgtaagtttgc ... tatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
tgaaactccaaaaatactgagctaccaaaacaggccctaacaagctatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
ccctaac putative branch site (score: 2)
aaaaatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaccctaaatactacggtattcataaattccatagttttatcttgaaactccaaaaatactgagctaccaaaacaggccctaacaagctatttatcagGTCGAAACATTTGGCTCCATGGCAAAGACGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG