1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagcttcgatgattcttcgacacaaaattcaaccaattactgaattttatatattgcttatgttccttcttcactctaaattaatcccccttttgaagCTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAAGTTCTAAAGGATATAGCAAAAGAGCATCAGATTGATTGGGATACCGCTG
species | Zea mays |
transcript | GRMZM2G012413_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTT CTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAAEST: gi|148999901|gb|EE036946.2|EE036946
genomic: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTTgtaagcttcg ... ccttttgaagCTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAA
EST: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTT CTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAAEST: gi|149076185|gb|EE164779.2|EE164779
genomic: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTTgtaagcttcg ... ccttttgaagCTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAA
EST: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTT CTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAAEST: gi|211369839|gb|FL433659.1|FL433659
genomic: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTTgtaagcttcg ... ccttttgaagCTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAA
EST: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTT CTGATTGAGAAGNCTGTCGATCAAGAAGCCTTCCGGGCAAATTAAGCTGAAEST: gi|148945139|gb|EC890337.2|EC890337
genomic: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTTgtaagcttcg ... ccttttgaagCTGATTGAGAAG-CTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAA
EST: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTT CTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAAEST: gi|71322908|gb|DR798137.1|DR798137
genomic: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTTgtaagcttcg ... ccttttgaagCTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAA
EST: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTT CTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAAEST: gi|71767968|gb|DR965905.1|DR965905
genomic: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTTgtaagcttcg ... ccttttgaagCTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAA
EST: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTT CTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAA
genomic: TTGTTTCTGCTGCAGTTGACTTGCGCCCAGATGCTGCTGTTAACAACCTTgtaagcttcg ... ccttttgaagCTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAA
attttatatattgcttatgttccttcttcactctaaattaatcccccttttgaagCTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAAGTTCTAAAGGATATAGCAAAAGAGCATCAGATTGATTGGGATACCGCTG
aattaat putative branch site (score: 38)
ttaatccccctttt CT-rich tract
tctaaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttcgatgattcttcgacacaaaattcaaccaattactgaattttatatattgcttatgttccttcttcactctaaattaatcccccttttgaagCTGATTGAGAAGCTGTCGATTAAGAAGCCTTCCGGGCAAATTAAGCTGAAAGTTCTAAAGGATATAGCAAAAGAGCATCAGATTGATTGGGATACCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA